Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13j04
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1382 - 29758759-29758806,29758888-29758943,29759901-297600...    29   3.3  
08_02_0783 - 21166491-21166892,21167139-21167251,21168127-211682...    27   9.9  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    27   9.9  
01_06_0617 - 30643177-30643506                                         27   9.9  

>06_03_1382 -
           29758759-29758806,29758888-29758943,29759901-29760000,
           29760107-29760220,29760807-29760854,29760959-29761021,
           29761237-29761439,29761518-29761578,29761685-29761790,
           29761920-29761987,29762344-29762418,29762507-29762589,
           29762788-29762953
          Length = 396

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 575 DLLYDGFVHRLQTYFLHGGFSG 510
           D+L+DG  HR++ + LH  F G
Sbjct: 323 DILFDGQTHRIKKFVLHTNFPG 344


>08_02_0783 -
           21166491-21166892,21167139-21167251,21168127-21168208,
           21168298-21168416,21168471-21168528,21168954-21169016,
           21169641-21169850,21171549-21171731
          Length = 409

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 560 GFVHRLQTYFLHGGFSGLH 504
           GFVH++ T+    GF GLH
Sbjct: 137 GFVHKIATFEKAAGFQGLH 155


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 442 QLLAASKRSSLRQFSVPKRATPAGRSSSARNTLLATRRA 326
           Q+LA    SS +  +     T  GRSSSA +T+ +TR A
Sbjct: 468 QILATIAPSSRKHAAAATLVTRIGRSSSAGDTMHSTRLA 506


>01_06_0617 - 30643177-30643506
          Length = 109

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 475 LPARRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSARNTLLAT 335
           LPARR    +K+       + +R+ + P+R   A  SSS    + AT
Sbjct: 47  LPARRCRCRRKEAEVGEAAADVRKAATPRRRWGAPSSSSPHVAVAAT 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,058,784
Number of Sequences: 37544
Number of extensions: 380135
Number of successful extensions: 940
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)