Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13j02
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   4.4  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.4  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    24   7.8  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    24   7.8  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 343 FYSKFILFILMHNFDDNDEILVDVRVV 263
           F   F L++  +NF+DN  + +D+ ++
Sbjct: 905 FSGVFFLYLKNYNFNDNQFLFMDLLII 931


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 263 NNTNIHQNFIIIVKIMH*NEQYKF 334
           N T I + FI I+K ++ NE++ +
Sbjct: 113 NTTRIRETFIDIIKALYVNEKHHY 136


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 188 DMQMPDIISASAVGNSLSLADAVLANNTNIHQNFIIIVKI 307
           D + P +   S + N +++  A L +NT+ H+N +   K+
Sbjct: 862 DFKEPHLFLRSRL-NEITVYKAFLYSNTDKHKNLLAFAKV 900


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 340 YSKFILFILMHNFDDNDE 287
           Y   + FILM+++D NDE
Sbjct: 148 YDVSVPFILMNSYDTNDE 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,365,121
Number of Sequences: 5004
Number of extensions: 22338
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)