Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13j02
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0637 - 12491706-12492575,12492580-12492657                       28   1.8  
06_01_0083 - 659510-661267,661577-662384,662700-663646                 27   5.3  

>02_02_0637 - 12491706-12492575,12492580-12492657
          Length = 315

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 234 ELPTAEALIISGICMSATCSTGCS 163
           +LPT+  LI+  + + +TC  GCS
Sbjct: 67  DLPTSALLILYNLLLCSTCRAGCS 90


>06_01_0083 - 659510-661267,661577-662384,662700-663646
          Length = 1170

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 281 GGCSCCLPKRRRPVTT 234
           G CSCC P+RR+  T+
Sbjct: 751 GCCSCCFPQRRKVKTS 766


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,421,698
Number of Sequences: 37544
Number of extensions: 134843
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)