Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13i19
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    79   5e-16
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    32   0.054
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    31   0.094
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    29   0.66 
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    29   0.66 
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    28   1.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.5  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.7  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   6.2  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   6.2  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   8.1  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    22   9.4  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 79.0 bits (186), Expect = 5e-16
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = +3

Query: 384 DICRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWLTASETRSCELCKFNF 542
           +ICR+C CE  P +PL  PC C+GS++YVHQ CL +WL  S+   CELCK  F
Sbjct: 6   EICRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKF 58


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 390  CRICHCESEPQNPLLAPCYCSGSLKY-VHQSCLQQWLTASETRSCELCKFNF 542
            C IC+     +  L  P    G+ ++  H SCL +W  +S +  C LC+ +F
Sbjct: 1558 CAICYSVLSVERTL--PNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCRSSF 1607


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 31.5 bits (68), Expect = 0.094
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 465 YVHQSCLQQWLTASETRSCELCK 533
           + HQ+C+ QWLT     SC LC+
Sbjct: 788 FFHQACIDQWLTTG-NNSCPLCR 809


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 179 HFSFQVNRKCILTYCNFCVNTFF 247
           HFSF +    I +YCNF +  FF
Sbjct: 320 HFSFGIVVLAIFSYCNFGIKQFF 342


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 390 CRICHCESEPQNPLLAPCYCSGSLKYVHQSCLQQWLTASETRSCELCK 533
           C IC CE   ++PL     C       H +C+  +L    +  C LCK
Sbjct: 498 CTICLCEYSEESPLYRELPCH---HIFHPACIDPYL-LKNSDLCPLCK 541


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 465 YVHQSCLQQWLTASETRSCELCKFNFI 545
           Y H  CL+ W   + T  C LC+  F+
Sbjct: 59  YFHNHCLESWCRVANT--CPLCRTEFL 83


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 339 SVQFLYHNHRPIPNFQFPMNSSHLFVERALL 247
           S  F     RP PNF  P   S L + R LL
Sbjct: 87  SFSFPLSQKRPFPNFLHPFTGSELSLFRCLL 117


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 465 YVHQSCLQQWLTASETRSCELCK 533
           Y H++C++ WL  + T  C +C+
Sbjct: 417 YFHENCIKPWLRVNGT--CAICR 437


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 462 KYVHQSCLQQWLTASETRSCELCKFNFIMHTKIK 563
           KY  +S +Q  L+    R C+LCK  F+ H  +K
Sbjct: 457 KYNVESHIQTHLSDRPYR-CDLCKAGFVRHHDLK 489


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 568 NGLIL-VCMMKLNLHSSQDLVSDAVNHCCK 482
           NGL+  +C + +N   +++ +  AVNH CK
Sbjct: 194 NGLVTQLCNIFVNHSKAREDIQKAVNHICK 223


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 206 CILTYCNFCVNTFFNNARSTNKC 274
           C   +CNFC+ +      +T KC
Sbjct: 221 CGHIFCNFCILSALGTTAATQKC 243


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 22.2 bits (45), Expect(2) = 9.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 453 GSLKYVHQSCLQQWLTASETRSC 521
           G L ++H   + ++  AS++RSC
Sbjct: 62  GLLVFLHSLIVARFFVASKSRSC 84



 Score = 21.0 bits (42), Expect(2) = 9.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 417 PQNPLLAPCYC 449
           P   +L+PCYC
Sbjct: 26  PSPRILSPCYC 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,140
Number of Sequences: 5004
Number of extensions: 42393
Number of successful extensions: 128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)