Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13i19
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.72 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   0.96 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   5.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 450 NNNMGPTMGSVVHSHN 403
           N+ MGPTMG   H H+
Sbjct: 340 NHTMGPTMGPPHHHHH 355


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +3

Query: 444 YCSGSLKYVHQSCLQQWLTASETRSCELCKFNFIMHTKIKPFNEWRL 584
           Y + ++  +  + +  WL  S T    +   NFI+H       +WR+
Sbjct: 250 YVTLTIVLMTMTLMTLWLEPSSTERMIIANLNFILHLFCLLDVQWRI 296


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 229  KVTIS*NTFSIYLKTKVAFVLNMNIAA*ISRNHPSRATF 113
            K+T +  T    +    AF++N N+    S+N   R  F
Sbjct: 944  KLTKTSGTVQAQINPDFAFIVNSNLRLTFSKNVQGRVGF 982


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -1

Query: 420 VVHSHNGIYDKYLRCSCCMMFDCSQTQSVQFLYHNHRPIP 301
           V   H    ++Y RC  C    CS+   +  +Y  H+  P
Sbjct: 25  VADKHAERQEEY-RCVICERVYCSRNSLMTHIYTYHKSRP 63


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 447 CSGSLKYVHQSCLQQWLTASETRSCELCKFNFIMH 551
           C G  ++  QS    WLT     S   C   F+ H
Sbjct: 339 CIGYGRFPPQSLTDMWLTMLSMISGATCYALFLGH 373


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 447 CSGSLKYVHQSCLQQWLTASETRSCELCKFNFIMH 551
           C G  ++  QS    WLT     S   C   F+ H
Sbjct: 307 CIGYGRFPPQSLTDMWLTMLSMISGATCYALFLGH 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,343
Number of Sequences: 438
Number of extensions: 2800
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)