Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13i17
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 186 2e-48
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 43 3e-05
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 43 3e-05
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 31 0.12
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 30 0.16
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 29 0.37
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.49
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 1.5
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 2.0
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 2.6
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 4.5
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 6.0
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 7.9
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.9
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass... 25 7.9
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 25 7.9
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 186 bits (453), Expect = 2e-48
Identities = 88/137 (64%), Positives = 109/137 (79%), Gaps = 1/137 (0%)
Frame = +3
Query: 60 SKGGLRTIAN-EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGD 236
+K +R++ N +E+E R+G +F+VSGPVV A M G +MYELVRVG+ ELVGE+IR+ D
Sbjct: 8 AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQD 67
Query: 237 MATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPK 416
TIQVYEETSG+TVGDPV RTGKPLSVELGPG+ +I+DGIQRPLK I + +QSIYIP+
Sbjct: 68 KCTIQVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPR 127
Query: 417 GINVPSLAREVDWEFNP 467
GIN SL RE W+F P
Sbjct: 128 GINTESLNREHKWDFTP 144
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 42.7 bits (96), Expect = 3e-05
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Frame = +3
Query: 108 FGYVFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGVT 278
+ V +++GP+V + + E+V + + G+++ + G A +QV+E TSGV
Sbjct: 24 YNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVRSGQVLEVAGHKAIVQVFEGTSGVD 83
Query: 279 VGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL-KDINELTQSIYIPKGINVPSLAR 443
V + TG + + + +LG +F+G P+ K N L + G + AR
Sbjct: 84 VRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYLDINGSPINPYAR 140
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 42.7 bits (96), Expect = 3e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 228 EGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIY 407
E + TI + + T G+ G V+ TG P+S+ +GPG LG I + I P+ + + Y
Sbjct: 102 ENTVRTIAM-DGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKY 160
Query: 408 IPKGINVPSLARE 446
P + PS +
Sbjct: 161 SPIHADAPSFEEQ 173
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 30.7 bits (66), Expect = 0.12
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 227 KTDNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDISEPLLILLIGDRP 75
+T +L E DTD+ VHS+S GS+ S D E +I ++G P
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 30.3 bits (65), Expect = 0.16
Identities = 24/118 (20%), Positives = 50/118 (42%)
Frame = +3
Query: 96 NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 275
+EE VF++ +++ ++S + +Y +V V G + + Q+ E+
Sbjct: 201 DEEDIALVFSLLNCIISYGRISSAVLYSIVEVVCRAKFGLVA---SSQSAQQIVEKLLKT 257
Query: 276 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREV 449
L + K + E G +I GIQ ++ +S+Y +G+ + L R +
Sbjct: 258 ATKYEALNSLKRIMEETDEGSYIAIMGGIQIVSALFTDIPRSVYCTRGMLLGFLQRSL 315
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 29.1 bits (62), Expect = 0.37
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 294 VLDHLQLHLKFLRIPGWWPC 235
V+D L + LR+P WWPC
Sbjct: 67 VVDISNLVIYALRVPNWWPC 86
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.49
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 361 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPE 266
IPS + P P T GFP R PT+ P+
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 169 ADPDIFSAVTTGPDTAKTYPN 107
AD +F AV PDTAK YPN
Sbjct: 33 ADAVVFKAVGVAPDTAK-YPN 52
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 2.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 449 NLPGQGRHVDTLGDVDGLSQLVDVLEGTLNTVKDGTQDTGTKFY*QRLSSTE 294
+L Q HVD D S L+ +L LN ++G K+Y SST+
Sbjct: 40 SLSAQQPHVD-----DQRSSLLSLLNAGLNASNQSPSNSGPKYYASHSSSTD 86
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 228 EGDMATIQVYEETS-GVTVGDPVLRTGKPLSVE 323
E D A++ + T+ +T DPV + KPL++E
Sbjct: 572 ENDKASVSITTTTTPSITPADPVPTSPKPLAIE 604
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 264 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 392
TS +TVGD V+ + + LGS++ +++ D+ +L
Sbjct: 375 TSNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQL 417
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 6.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 160 DIFSAVTTGPDTAKTYPNLSSFSSLAIVLK 71
D + GP +T+PN+ S +SLA+ K
Sbjct: 244 DTHLPIKMGPLDVQTHPNIRSIASLALSRK 273
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 298 RSTGSPTVTPEVSSYT 251
RS G+PT PE +YT
Sbjct: 1553 RSLGTPTALPETQTYT 1568
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 334 PGPSSTDKGFPVRSTGSPTVTPEVSS 257
P PS FP ST +P+ P +S
Sbjct: 378 PNPSVASPAFPNSSTSNPSTAPASAS 403
>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
assembly of the V-ATPase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 186
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 276 TVGDPVLRTGKPLSVELG 329
T DPVL++ + L++ELG
Sbjct: 158 TTNDPVLQSNEQLAIELG 175
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 7.9
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -2
Query: 398 LSQLVDVLEGTLNTVKDGTQD 336
+S+ +D+L+ NT+K+G Q+
Sbjct: 55 ISEFMDILQNGSNTLKEGVQN 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,799
Number of Sequences: 5004
Number of extensions: 38348
Number of successful extensions: 146
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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