Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13i13
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    27   0.19 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.58 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.58 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    25   0.77 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.4  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   7.2  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 439 GPKLSRLQFRAQSNRYVLEKRLQEIS 516
           G +L+RL+     NRY+ E+R Q++S
Sbjct: 29  GEQLARLKREFAENRYLTERRRQQLS 54


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 389 FRTREKNTLALHVVSPEVLNYHGY 460
           F TR   T  L  V P+V+ Y GY
Sbjct: 310 FTTRHNATCYLSHVDPDVVQYFGY 333


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 389 FRTREKNTLALHVVSPEVLNYHGY 460
           F TR   T  L  V P+V+ Y GY
Sbjct: 16  FTTRHNATCYLSHVDPDVVQYFGY 39


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 445 KLSRLQFRAQSNRYVLEKRLQEIS 516
           +L+RL+     NRY+ E+R Q++S
Sbjct: 31  QLARLKREFAENRYLTERRRQQLS 54


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 131 ESEYEERSPEDSPKVTKKSLSTVG 202
           E  YE R+    P  T K   T+G
Sbjct: 244 ERHYERRATPPQPDRTSKDQGTIG 267


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 116 DISDRESEYEERSPEDSPKV 175
           D+SD +S YE  S E   K+
Sbjct: 33  DLSDLKSMYESNSEEQMKKL 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,591
Number of Sequences: 438
Number of extensions: 3660
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)