Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13i09
         (306 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    26   5.1  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    26   6.7  

>01_03_0103 -
           12567986-12568141,12568307-12568442,12568751-12568824,
           12568932-12569175,12569480-12569766,12570618-12571103,
           12571348-12571459,12571540-12571745,12573071-12573276,
           12573831-12574162,12574284-12574825,12574967-12576308,
           12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 202 KYNKSSCSNRYL 167
           KYNKS CSN+Y+
Sbjct: 943 KYNKSPCSNQYI 954


>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 145  IFHSCTDVGTYLNN*IYCIYLQN*NN 222
            I+ +C D G + +  IY I L+N NN
Sbjct: 1353 IYIACEDCGDWFHGDIYSITLENVNN 1378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,725,091
Number of Sequences: 37544
Number of extensions: 88315
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)