Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13i07
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    28   0.79 
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    27   1.8  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    27   2.4  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        25   7.3  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   9.7  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    25   9.7  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   9.7  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.7  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +1

Query: 175 ANALTELERSLALLAFPDPHTSPFADLLLPSHGQKIASELNAAILKM 315
           +N    ++ S+ LLA+ DP +SP +  +     + +A ++N  +L++
Sbjct: 393 SNLQAMIKLSMGLLAYFDPFSSPLSFFMSSDFHKYMAEQINCLLLEL 439


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 274 QKIASELNAAILKMENQEY-TNPKLCSLLRMILWSQSELDKHNIKYPKMTD 423
           ++IA+ +++  L+ E   Y TNP   SLL  +L   S  + H I   +MTD
Sbjct: 400 EEIANAMHSLKLEPETSIYLTNPGSLSLLEYLLRLCSLQELHQISCLEMTD 450


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/36 (30%), Positives = 25/36 (69%)
 Frame = -2

Query: 241 VRYVDQGRPVKPMTSLVQSEHWHHWHQPLRALHLQR 134
           V+YV+ G+P+KPM S + +++ ++  Q + +L  ++
Sbjct: 62  VKYVN-GKPLKPMKSEISTDYLNNAFQTIESLGAEK 96


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +1

Query: 196 ERSLALLAFPDPHTSPFADLLLPSHGQKIASELNAAILKMENQE----YTNPKLCSLLRM 363
           ++S  L  F DP   PFA   + S  +     LN  ILK  +Q     + N K C  ++ 
Sbjct: 140 DKSFELAQFTDPDLPPFAKCTIESSPE----ALNNIILKYGDQSGLELFVNDKPCFQVKD 195

Query: 364 ILWSQ 378
           ++  Q
Sbjct: 196 VILPQ 200


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 319 NQEYTNPKLCSLLRMILWSQSELDKHNIKYPKMTDLAN 432
           N E T  K+ S+     W Q ELDK ++     T L N
Sbjct: 85  NAEQTRQKIYSIHIHSPWDQLELDKKSLYEQPHTKLYN 122


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 259 LPSHGQKIASELNAAILKMENQEYTNPKLCSLL-RMIL-WSQSELDKHNIK 405
           L  H +KIA+E    +  +E Q     K  SLL R +L W  S     NIK
Sbjct: 132 LREHCKKIAAEGTKGVKVVEKQRAETQKYLSLLDRALLPWRASSPPTVNIK 182


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 262 PSHGQKIASELNAAILKMENQEYTNPKLCSLLRMILWSQSELDKHNI 402
           P+  +   S L      +ENQ ++  ++C  LR  L + S   K  +
Sbjct: 242 PNEVKNRISRLQKTFADLENQHHSFQQICQTLRKRLENDSSTTKQRL 288


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 218 PSLIHIPHPLLICCCLRTVKRLQV 289
           P  IH  HPL +  CL   K +QV
Sbjct: 806 PLRIHPTHPLRVTVCLPGSKTIQV 829


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,323
Number of Sequences: 5004
Number of extensions: 36527
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)