Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13i07
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0286 + 7100342-7100504,7100613-7100719,7102109-7102240,710... 73 2e-13
02_04_0225 - 21063445-21063636,21063726-21063911,21064052-210641... 29 1.8
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 2.4
09_04_0039 + 14023383-14023727 28 4.3
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 27 7.5
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 27 7.5
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 27 9.9
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843... 27 9.9
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611... 27 9.9
>03_02_0286 +
7100342-7100504,7100613-7100719,7102109-7102240,
7102383-7102539,7103099-7103220
Length = 226
Score = 72.5 bits (170), Expect = 2e-13
Identities = 37/89 (41%), Positives = 59/89 (66%)
Frame = +1
Query: 184 LTELERSLALLAFPDPHTSPFADLLLPSHGQKIASELNAAILKMENQEYTNPKLCSLLRM 363
L E+E+++ALL F D P+ +LL S K ASE+NAAIL ++ E +PKL SLL+M
Sbjct: 138 LEEIEKTVALLVFEDIKNCPYGELLDVSQRLKTASEVNAAILTSQSHE-KDPKLPSLLKM 196
Query: 364 ILWSQSELDKHNIKYPKMTDLANATIGQP 450
++W+Q++LD+ YP++ + + A + P
Sbjct: 197 LIWTQNQLDE-KAAYPRINNFSTAALEDP 224
>02_04_0225 -
21063445-21063636,21063726-21063911,21064052-21064138,
21064589-21064648,21064984-21065052,21065684-21065837,
21066127-21066203,21066634-21066679,21067167-21067253,
21067653-21067799,21069042-21069304
Length = 455
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 193 LERSLALLAFPDPHTSPFADLLLPSHGQKIASELNAAILKMENQEYTNPKLC 348
L+ S+ALLA+ P S LL + +A +NAA+L N +P+ C
Sbjct: 329 LKESVALLAYEKPAESCIGYLLDSPQREFVADAVNAAVLS-TNPNMKDPESC 379
>01_06_0481 -
29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 205 LALLAFPDPHTSPFADLLLPSHGQKIASELNAAILKMENQEYTNPKL 345
L + F T+ F L + +K+ N + KME +EYT ++
Sbjct: 434 LDIYGFESFKTNSFEQLCINFTNEKLQQHFNQNVFKMEQEEYTREQI 480
>09_04_0039 + 14023383-14023727
Length = 114
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -2
Query: 199 SLVQSEHWHHWHQPLRALH--LQRLMPLQHVLHESAPKVVIECRILQ*TKIA 50
++V++ H P R LH LQR +P LH +A ++E R T IA
Sbjct: 20 AMVETRLGMETHTPPRFLHHDLQRRLPCDGALHTTADDAMVETRSRTETCIA 71
>03_06_0766 -
36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 205 LALLAFPDPHTSPFADLLLPSHGQKIASELNAAILKMENQEYTNPKL 345
L + F T+ F + +K+ N + KME +EYT ++
Sbjct: 410 LDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEI 456
>02_04_0157 +
20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 205 LALLAFPDPHTSPFADLLLPSHGQKIASELNAAILKMENQEYTNPKL 345
L + F T+ F + +K+ N + KME +EYT ++
Sbjct: 446 LDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEI 492
>05_06_0219 +
26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 205 LALLAFPDPHTSPFADLLLPSHGQKIASELNAAILKMENQEYTNPKL 345
L + F T+ F L + +K+ N + KME +EY ++
Sbjct: 433 LDIYGFESFKTNSFEQLCINFTNEKLQQHFNQNVFKMEQEEYNREQI 479
>02_05_0847 +
32183249-32183486,32184001-32184118,32184231-32184376,
32184591-32186080
Length = 663
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 199 RSLALLAFPDPHTSPFADLLLPSH 270
R ++ P P PFADL+LP H
Sbjct: 90 RDDGVVLMPSPLVHPFADLVLPYH 113
>01_06_0210 -
27559090-27559239,27560445-27560567,27561069-27561128,
27562045-27562068,27562313-27562653,27562684-27563731
Length = 581
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -2
Query: 268 AKAAADQQRVRYVDQGRPVKPMTSLVQSEHWHHWHQPLRALHLQRLMPLQHVLHESA 98
A + + R + G P SL+++ + HQPL ALHL R P L SA
Sbjct: 84 ASSLLSRSRELFPSPGELEPPFLSLLRA--YSRAHQPLAALHLFRSAPSALGLPHSA 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,200,328
Number of Sequences: 37544
Number of extensions: 238491
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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