Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13i07
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   0.88 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.6  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   6.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.2  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 183 SIGIIGTSLCERCTCKG*CLFS 118
           S  I+  ++ ERC  K  CLFS
Sbjct: 131 STTIVSGAMAERCNFKAYCLFS 152


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 400 CCACPAHSETTGSCEEDC 347
           C ACPAHS+++     +C
Sbjct: 279 CEACPAHSKSSDYGFTEC 296


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 501 TCDVLKDPSKW 533
           TCDVL   SKW
Sbjct: 63  TCDVLSWQSKW 73


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 74  DPPINKNCRTSN 39
           DPPI   C+T N
Sbjct: 430 DPPIGCECKTCN 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,788
Number of Sequences: 438
Number of extensions: 2406
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)