Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13i03
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.0  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   5.3  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   5.3  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   5.3  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   5.3  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   5.3  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   5.3  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   5.3  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   5.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    20   9.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    20   9.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   9.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   9.3  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 189 IQTQS--AKGSLARLMALKPLIKTEKRRDLTDHRYNQEK 299
           I+T S   KGS+AR  +L     +++   LT H+  + K
Sbjct: 201 IETDSDRRKGSIARCWSLDSTAASDEDISLTTHQQKRHK 239


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 212 KLSEINGIKTTD*NREAKRFN*P*IQSREILSCCSS*LRKFWNMLYNIN 358
           ++ +I+ +   D      R N    Q  E +   S  L+KF N  YN N
Sbjct: 515 RMDKIDRMDRMDRTNRMDRMNRMNRQMNEYMMALSMKLQKFINNDYNFN 563


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 395 NKNEFIYLHTTINLYYKAYSKIYATMNY 312
           N N   Y +   N  Y  Y K+Y  +NY
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 395 NKNEFIYLHTTINLYYKAYSKIYATMNY 312
           N N   Y +   N  Y  Y K+Y  +NY
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 395 NKNEFIYLHTTINLYYKAYSKIYATMNY 312
           N N   Y +   N  Y  Y K+Y  +NY
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 395 NKNEFIYLHTTINLYYKAYSKIYATMNY 312
           N N   Y +   N  Y  Y K+Y  +NY
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 395 NKNEFIYLHTTINLYYKAYSKIYATMNY 312
           N N   Y +   N  Y  Y K+Y  +NY
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 395 NKNEFIYLHTTINLYYKAYSKIYATMNY 312
           N N   Y +   N  Y  Y K+Y  +NY
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 395 NKNEFIYLHTTINLYYKAYSKIYATMNY 312
           N N   Y +   N  Y  Y K+Y  +NY
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 395 NKNEFIYLHTTINLYYKAYSKIYATMNY 312
           N N   Y +   N  Y  Y K+Y  +NY
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 356 LYYKAYSKIYATMNY 312
           LY   Y K+Y  +NY
Sbjct: 99  LYCNNYKKLYYNINY 113


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 356 LYYKAYSKIYATMNY 312
           LY   Y K+Y  +NY
Sbjct: 99  LYCNNYKKLYYNINY 113


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 371 HTTINLYYKAYS 336
           H T NLYY A S
Sbjct: 257 HKTQNLYYSAMS 268


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 161 SFSSSRNPL 135
           SFS SRNPL
Sbjct: 503 SFSGSRNPL 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,190
Number of Sequences: 438
Number of extensions: 1247
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)