Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13i02
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0780 + 21467056-21467187,21467928-21468231,21469289-21469569 32 0.39
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 2.7
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 29 2.7
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 3.6
09_03_0061 - 11967727-11967765,11967872-11967910,11967996-119682... 29 4.8
07_03_1730 - 29099262-29099807 29 4.8
03_02_0610 + 9834083-9834368,9834495-9834556,9834695-9834787,983... 29 4.8
01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136 29 4.8
11_06_0069 + 19770182-19770379,19770470-19772703,19772789-197730... 28 6.3
05_03_0458 + 14280953-14281866,14281964-14282912 28 6.3
11_02_0086 + 8186355-8186667,8186773-8187335 28 8.3
06_01_1005 - 7810210-7810907,7811005-7811080,7811180-7811368,781... 28 8.3
01_05_0224 + 19485296-19485493,19485584-19487817,19487903-194881... 28 8.3
>07_03_0780 + 21467056-21467187,21467928-21468231,21469289-21469569
Length = 238
Score = 32.3 bits (70), Expect = 0.39
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +1
Query: 193 WTRARPGQRRHLVSR*YARQRGSQDVHRPSLGFVW---RRWKAASR-SPEWWSQLTAKSS 360
W ARP + L R A G R S +VW RR KA R +P S ++AK
Sbjct: 81 WREARPVEEAGLAQRGAAGDGGGDLGVRRSCRWVWRGLRRMKAGRRGTPVQGSHMSAKLV 140
Query: 361 YRYSVSCSCLSDAS*PRHRTAAV-VRTKSPTTTLPVLLSPGTRESS 495
+ +S+ + A+ P +A V + ++ P +LL P T +SS
Sbjct: 141 WWWSIG---PTTANPPASGSATVDLDSQDPVVADLMLLRPVTADSS 183
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 132 ESKMTRSSYRPLVPRSSINSLDTRETGTTSPPGEPLVRAPAGKPRCPP 275
E + R P P ++ N+ PPG P P GKP PP
Sbjct: 895 EKRAPRVPRPPPAPSATANTASALSPPPPRPPGAPPPPPPPGKPGGPP 942
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Frame = +3
Query: 177 SSINSLDTRETGTTSPPGEPLVR--APAGKPRCPPAISRLRLEKVEXXXXXXXXXXXXNC 350
S +S T G T+ P P R AP PRC P + +
Sbjct: 41 SRFSSRPTAMVGPTTQPPPPSSRHAAPRRVPRCAPKMLVASRHGAHPRRRRAGGNGVAD- 99
Query: 351 QIILPIFGFLFMLVGCVLTAASYRGCGENEEPD 449
++ LP+ G L +L+ V AA G EE D
Sbjct: 100 ELALPLAGGLALLLAFVTAAAVLSGGDRREEGD 132
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 132 ESKMTRSSYRPLVPRSSINSLDTRETGTTSPPGEPLVRAPAGKPRCPP 275
E + R P P ++ N+ PPG P P GKP PP
Sbjct: 590 EKRAPRVPRPPPAPSATANTASALPPPPPRPPGAPPPPPPPGKPGGPP 637
>09_03_0061 -
11967727-11967765,11967872-11967910,11967996-11968284,
11968367-11968515,11968693-11969469
Length = 430
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 213 TTSPPGEPLVRAPAGKPRCPPAISR 287
TT+P G PL R PA P PPA R
Sbjct: 83 TTAPGGRPLKR-PASAPSAPPAQDR 106
>07_03_1730 - 29099262-29099807
Length = 181
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 389 CRMRPNRGIVPRLW*ERRARPLRCPYCFHRELESP 493
CR +RG + R W R P CP C R L+SP
Sbjct: 115 CRHLFHRGCLDRWWLSARP-PATCPLCRCRLLQSP 148
>03_02_0610 +
9834083-9834368,9834495-9834556,9834695-9834787,
9835689-9835805,9835972-9836055,9836198-9836293,
9836368-9836445,9836548-9836637,9836733-9836800,
9836940-9837021,9838203-9838289
Length = 380
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 641 VLRTERIEVAVDRAVECEATLTTLGGAHQHAQDDACDCHESAGD 510
+L R+ + + +CE TLT G H+ A DD ++ +
Sbjct: 175 LLLRHRLHIVGEALAQCEHTLTEFGIEHREAVDDTAGAAKTVAE 218
>01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136
Length = 505
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 229 PGGDVVPVSRVSSELIEDLGTSG 161
PG D++PV + E DLGT G
Sbjct: 193 PGDDIIPVCKAVLEAYRDLGTRG 215
>11_06_0069 +
19770182-19770379,19770470-19772703,19772789-19773040,
19773121-19773231,19773321-19773402,19773677-19773868
Length = 1022
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 96 RSDRALSAK*FSESKMTRSSYRPLVPRSSINSLDTRETGTTSPPGEPLVRAPAGKPRCPP 275
R D LSA + +T SS + + + PP P +R+P +P PP
Sbjct: 540 RRDIILSAAVLAAGSLTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPP 599
Query: 276 AISR 287
+ S+
Sbjct: 600 SPSQ 603
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 150 SSYRPLVPRS-SINSLDTRETGTTSPPGEPLVRAPAGKPRCPPAISRLR 293
SS R P S NS T T T PP +P+ P PP + L+
Sbjct: 24 SSCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPLQ 72
>11_02_0086 + 8186355-8186667,8186773-8187335
Length = 291
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 171 PR-SSINSLDTRETGTTSPPG-EPLVRAPAGKPRCPPAISRLRLEK 302
PR SSI S E SPPG EP V +P PR P ++ R+EK
Sbjct: 226 PRDSSIASPPRPEPPVASPPGPEPPVASP---PRPEPPVASPRIEK 268
>06_01_1005 -
7810210-7810907,7811005-7811080,7811180-7811368,
7811507-7811728,7811906-7812004,7812112-7812192,
7812384-7812679,7812777-7813116,7813221-7813284,
7813511-7813735,7816958-7817244
Length = 858
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 375 FLFMLVGCVLTAASYRGCGENEE 443
F+F L+GC A Y+ CG EE
Sbjct: 177 FIFDLLGCFPWDAIYKACGSKEE 199
>01_05_0224 +
19485296-19485493,19485584-19487817,19487903-19488154,
19488235-19488345,19488435-19488516,19488791-19488982
Length = 1022
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 96 RSDRALSAK*FSESKMTRSSYRPLVPRSSINSLDTRETGTTSPPGEPLVRAPAGKPRCPP 275
R D LSA + T SS + + + + PP P +R+P +P PP
Sbjct: 540 RRDIILSAAVLAAGSSTPSSSQAMTAAAPAPPSPPKPPSPRHPPSPPPLRSPPRQPTPPP 599
Query: 276 AISR 287
+ S+
Sbjct: 600 SPSQ 603
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,480,808
Number of Sequences: 37544
Number of extensions: 381453
Number of successful extensions: 1401
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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