Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13i02
         (706 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29474-1|AAA60248.1| 1043|Homo sapiens RAG1 protein.                   33   0.75 
BC037344-1|AAH37344.1|  931|Homo sapiens RAG1 protein protein.         33   0.75 
AK128837-1|BAC87637.1|  286|Homo sapiens protein ( Homo sapiens ...    31   4.0  
AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3...    31   5.3  
AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha...    31   5.3  
BC066895-1|AAH66895.1|  510|Homo sapiens protein inhibitor of ac...    30   7.0  
BC029874-1|AAH29874.1|  510|Homo sapiens protein inhibitor of ac...    30   7.0  
BC010047-1|AAH10047.2|  506|Homo sapiens PIAS4 protein protein.        30   7.0  
BC004389-1|AAH04389.1|  262|Homo sapiens PIAS4 protein protein.        30   7.0  
AK222726-1|BAD96446.1|  510|Homo sapiens protein inhibitor of ac...    30   7.0  
AF164437-1|AAD45155.1|  500|Homo sapiens protein inhibitor of ac...    30   7.0  
AF077952-1|AAC36703.1|  510|Homo sapiens protein inhibitor of ac...    30   7.0  
J04177-1|AAA51891.1| 1806|Homo sapiens COL11A1 protein.                30   9.3  
BC117697-1|AAI17698.1| 1690|Homo sapiens COL11A1 protein protein.      30   9.3  
AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha ...    30   9.3  
AF101112-3|AAF04724.1| 1767|Homo sapiens collagen type XI alpha-...    30   9.3  
AF101112-2|AAF04726.1| 1818|Homo sapiens collagen type XI alpha-...    30   9.3  
AF101112-1|AAF04725.1| 1806|Homo sapiens collagen type XI alpha-...    30   9.3  

>M29474-1|AAA60248.1| 1043|Homo sapiens RAG1 protein.
          Length = 1043

 Score = 33.5 bits (73), Expect = 0.75
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 143 HLRFTKSFGT*CTIRSQSIHTSQVRNYCNITRRSERSDEH 24
           H +F+K F      R ++IH + +R+ C I   S R+DEH
Sbjct: 84  HPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRADEH 123


>BC037344-1|AAH37344.1|  931|Homo sapiens RAG1 protein protein.
          Length = 931

 Score = 33.5 bits (73), Expect = 0.75
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 143 HLRFTKSFGT*CTIRSQSIHTSQVRNYCNITRRSERSDEH 24
           H +F+K F      R ++IH + +R+ C I   S R+DEH
Sbjct: 84  HPKFSKKFHDNEKARGKAIHQANLRHLCRICGNSFRADEH 123


>AK128837-1|BAC87637.1|  286|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46366 fis, clone TESTI4051388. ).
          Length = 286

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 147 RSSYRPLVPRSSINSLDTRETGTTSPPGEPLVRAP--AGKPRCPPAISRLR 293
           R+S R   PR+S+    TR   T  PP  P  R P  A   R PP  S  R
Sbjct: 60  RASPRRTPPRASLTRPPTRAPPTRMPPTAPPTRTPPTASPARTPPTESPAR 110


>AF177941-1|AAF59902.1| 1745|Homo sapiens collagen type V alpha 3
            chain protein.
          Length = 1745

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 204  ETGTTSPPGEPLVRAPAGKPRCPPA 278
            + G   PPG+P +R PAG P  P A
Sbjct: 1092 DKGDAGPPGQPGIRGPAGHPGPPGA 1116


>AB209175-1|BAD92412.1| 1658|Homo sapiens collagen, type V, alpha 3
            preproprotein variant protein.
          Length = 1658

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 204  ETGTTSPPGEPLVRAPAGKPRCPPA 278
            + G   PPG+P +R PAG P  P A
Sbjct: 1005 DKGDAGPPGQPGIRGPAGHPGPPGA 1029


>BC066895-1|AAH66895.1|  510|Homo sapiens protein inhibitor of
           activated STAT, 4 protein.
          Length = 510

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 262 GFPAGARTNGSPGGDVVPVSRVSSELIED 176
           G P G+  NG PG DVV ++  SS   ED
Sbjct: 450 GGPVGSMENGKPGADVVDLTLDSSSSSED 478


>BC029874-1|AAH29874.1|  510|Homo sapiens protein inhibitor of
           activated STAT, 4 protein.
          Length = 510

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 262 GFPAGARTNGSPGGDVVPVSRVSSELIED 176
           G P G+  NG PG DVV ++  SS   ED
Sbjct: 450 GGPVGSMENGKPGADVVDLTLDSSSSSED 478


>BC010047-1|AAH10047.2|  506|Homo sapiens PIAS4 protein protein.
          Length = 506

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 262 GFPAGARTNGSPGGDVVPVSRVSSELIED 176
           G P G+  NG PG DVV ++  SS   ED
Sbjct: 446 GGPVGSMENGKPGADVVDLTLDSSSSSED 474


>BC004389-1|AAH04389.1|  262|Homo sapiens PIAS4 protein protein.
          Length = 262

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 262 GFPAGARTNGSPGGDVVPVSRVSSELIED 176
           G P G+  NG PG DVV ++  SS   ED
Sbjct: 202 GGPVGSMENGKPGADVVDLTLDSSSSSED 230


>AK222726-1|BAD96446.1|  510|Homo sapiens protein inhibitor of
           activated STAT, 4 variant protein.
          Length = 510

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 262 GFPAGARTNGSPGGDVVPVSRVSSELIED 176
           G P G+  NG PG DVV ++  SS   ED
Sbjct: 450 GGPVGSMENGKPGADVVDLTLDSSSSSED 478


>AF164437-1|AAD45155.1|  500|Homo sapiens protein inhibitor of
           activated STAT protein.
          Length = 500

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 262 GFPAGARTNGSPGGDVVPVSRVSSELIED 176
           G P G+  NG PG DVV ++  SS   ED
Sbjct: 440 GGPVGSMENGKPGADVVDLTLDSSSSSED 468


>AF077952-1|AAC36703.1|  510|Homo sapiens protein inhibitor of
           activated STAT protein PIASy protein.
          Length = 510

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 262 GFPAGARTNGSPGGDVVPVSRVSSELIED 176
           G P G+  NG PG DVV ++  SS   ED
Sbjct: 450 GGPVGSMENGKPGADVVDLTLDSSSSSED 478


>J04177-1|AAA51891.1| 1806|Homo sapiens COL11A1 protein.
          Length = 1806

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 GTTSPPGEPLVRAPAGKPRCPPA 278
           G T PPG+P  R P G+P  P A
Sbjct: 460 GPTGPPGDPGDRGPPGRPGLPGA 482


>BC117697-1|AAI17698.1| 1690|Homo sapiens COL11A1 protein protein.
          Length = 1690

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 GTTSPPGEPLVRAPAGKPRCPPA 278
           G T PPG+P  R P G+P  P A
Sbjct: 344 GPTGPPGDPGDRGPPGRPGLPGA 366


>AL627203-1|CAH73908.1| 1806|Homo sapiens collagen type XI alpha 1
           protein.
          Length = 1806

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 GTTSPPGEPLVRAPAGKPRCPPA 278
           G T PPG+P  R P G+P  P A
Sbjct: 460 GPTGPPGDPGDRGPPGRPGLPGA 482


>AF101112-3|AAF04724.1| 1767|Homo sapiens collagen type XI alpha-1
           protein.
          Length = 1767

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 GTTSPPGEPLVRAPAGKPRCPPA 278
           G T PPG+P  R P G+P  P A
Sbjct: 421 GPTGPPGDPGDRGPPGRPGLPGA 443


>AF101112-2|AAF04726.1| 1818|Homo sapiens collagen type XI alpha-a
           isoform B protein.
          Length = 1818

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 GTTSPPGEPLVRAPAGKPRCPPA 278
           G T PPG+P  R P G+P  P A
Sbjct: 472 GPTGPPGDPGDRGPPGRPGLPGA 494


>AF101112-1|AAF04725.1| 1806|Homo sapiens collagen type XI alpha-1
           isoform A protein.
          Length = 1806

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 GTTSPPGEPLVRAPAGKPRCPPA 278
           G T PPG+P  R P G+P  P A
Sbjct: 460 GPTGPPGDPGDRGPPGRPGLPGA 482


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,231,395
Number of Sequences: 237096
Number of extensions: 1967849
Number of successful extensions: 12042
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11965
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)