Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13i02
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024848-5|AAK68545.1|  254|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AC024848-5|AAK68545.1|  254|Caenorhabditis elegans Hypothetical
           protein Y67D8A.3 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 126 FSESKMTRSSYRPLVPRSSI--NSLDTRETGTTSPPGEPLVRAPAGKP 263
           +S  K    +Y     RSSI  NS D R++  ++PP       P+G P
Sbjct: 120 YSSDKNGHQTYTTTTRRSSIMTNSTDDRDSVVSTPPSTTNNSTPSGSP 167


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 171 PRSSINSLDTRETGTTSPPGEPLVRAPAGKPRCPPAISR 287
           PR S  +  TR    T  P  P  RAP    R PPA +R
Sbjct: 297 PRGSTAAPGTRAPPATRAP--PATRAPPATTRAPPATTR 333


>Z73105-2|CAA97439.2|  803|Caenorhabditis elegans Hypothetical
           protein R13.4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 406 PRHRTAAVVRTKSPTTTLPVLLSPGTRESSDQ 501
           P+ +  A+  +  PT TLPVL SP   ++  Q
Sbjct: 120 PKPKDPALQASSQPTGTLPVLTSPSCPQNGQQ 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,760,880
Number of Sequences: 27780
Number of extensions: 288507
Number of successful extensions: 1281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)