Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h24
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    30   0.27 
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    27   1.9  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.5  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.4  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   5.9  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.9  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   7.8  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   7.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.8  

>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +3

Query: 84  FLYGYNIDHNFAFSFCVP*LRTQTLVGIKTILSFKNANVLLFKGYYNISIYSRTFRGAAK 263
           FL+  N      ++ C+P L  Q    +    S +NA +L F      S Y     G A+
Sbjct: 524 FLFDMNSRTRATYASCLPILAKQASKFLNLAQSLRNAGILSFPE----SEYENINHGKAE 579

Query: 264 F*RESGKQNYIIRIKKRTS 320
              E+G+ + ++ +++  S
Sbjct: 580 LLFETGRHDLVVTVERHVS 598


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 343 NLHNVFNRFKIKFEIIYRSKADVETTIKITKLNRNSTVINIYVDDFYKTNYDEIRKNNLL 522
           NL  + NR      I   +K  V T +++T     S+V +I+++D Y       +   L+
Sbjct: 519 NLQALLNRI-----IFIIAKETVTTPLQLTSDLSISSVPSIHINDSYSCIISHTKYGKLV 573

Query: 523 YAGD 534
           Y+GD
Sbjct: 574 YSGD 577


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +1

Query: 241 VHSVELQNFKENPVNKIILLESKNAPPYAQYMYKNL--HNVFNRFKIKFEIIYRSKAD-V 411
           +H++ L   K   + KI++L SK        M  +L     F  F++    +Y    D V
Sbjct: 293 LHAINLSAIKSKHLQKIVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352

Query: 412 ETTIKITKLNRNSTV 456
           +  I +     NS V
Sbjct: 353 QRYISLDNRASNSLV 367


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +1

Query: 325  AQYMYKNLHNVFNRFKIKFEIIYRSKADVETTIKITKLNRNSTVINIYVDDFYKTNYDEI 504
            ++ + + L   F+R     ++ +  K  VET   +T  N     +N++ DDF+    D  
Sbjct: 1323 SENLRRELDKAFDRSGTAAKLKHPKKTVVETLDILTTFNLPEIRLNVHTDDFWIHGGDLT 1382

Query: 505  RKNNLL 522
            + +++L
Sbjct: 1383 QLHSIL 1388


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 319 PYAQYMYKNLHNVFNRFKIKFEIIYRSKADVETTIKITKLNRNSTVINIYVDD 477
           P  +  Y+ LH++ NR   K E +   K+D  T I  ++L   S   +  VDD
Sbjct: 321 PSKKAFYEKLHSLRNRSYSKLESLTSEKSD--TLITKSELANESEEDDFIVDD 371


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +1

Query: 70  LNLLFS--CMVTTSITILRFPSVFRN-SEPR 153
           LN++F+  C +   +T++RFPS++    +PR
Sbjct: 354 LNIIFAVICPIVLLLTLIRFPSLYEQLKKPR 384


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 73   NLLFSC-MVTTSITILRFPSVFRNSEPRLWLASKQYCRLKMQTSCYSKVIIILAFILVHS 249
            N +FS  M+T + T     S     +P+       Y + +  T+ YS+   I+AF LV +
Sbjct: 1121 NKMFSAYMLTVAST-----STMNGLQPKFIYFRSIYEQYEQNTAIYSRTAFIIAFFLVEA 1175

Query: 250  V 252
            V
Sbjct: 1176 V 1176


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 92  WLQH--RSQFCVFLLCSVTPNPDFGWHQNNIVV*K 190
           WLQ   R   C+++L     NP+ G ++ +++  K
Sbjct: 869 WLQTCIRQADCIYILAEADQNPNIGEYEQHLIAMK 903


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 244 HSVELQNFKENPVNKIILLESKNAPPYAQYMYKNLHNVF-NRFKIKFE 384
           ++++ Q   +  +  +++ +      Y+Q +  + HN+F N FK K E
Sbjct: 52  YTMQYQEATQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLE 99


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 499  EIRKNNLLYAGDIDLNTSTLLINNGVI 579
            E+  NNLL  G ID N +++L+++ V+
Sbjct: 2378 EMLHNNLLKYGIIDFNQNSMLVSDFVL 2404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,915
Number of Sequences: 5004
Number of extensions: 58442
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)