Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h24
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0710 - 5830475-5830595,5831498-5834124                           29   2.6  
04_01_0256 + 3402982-3402984,3403077-3403158,3403307-3403449,340...    29   2.6  
07_03_0139 + 14143383-14143512,14143601-14144334,14144413-141448...    29   4.6  
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...    28   6.0  
04_03_0262 + 13597021-13597150,13597239-13597972,13598051-135985...    28   8.0  

>11_01_0710 - 5830475-5830595,5831498-5834124
          Length = 915

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 7/164 (4%)
 Frame = +1

Query: 25  SSSIIDRSVKQHNVKLNLLFSCMVTTSITILRFPSVFRNSEPRLWLASKQYCRLKMQTSC 204
           S+++   SV +    L  L +  +T  I +L  P      +   ++  K   RLK   SC
Sbjct: 363 SNNVSLYSVPESLGNLRKLHTLDLTGCIGLLWLPESISKIQSLKYVLMKDLLRLKSTLSC 422

Query: 205 YSKVIIILAFILVHSVEL------QNFKENPVN-KIILLESKNAPPYAQYMYKNLHNVFN 363
           ++   I+L   +V +V+       Q    NP    I  LE+  +   A+ +   L    N
Sbjct: 423 FNNGPILLPNFVVQAVDKKSSNLGQLLDANPAELDISSLENVKSTKEAKGI--KLSGKRN 480

Query: 364 RFKIKFEIIYRSKADVETTIKITKLNRNSTVINIYVDDFYKTNY 495
             K+KF+    +K  VE    + +L   STV    +  ++ T++
Sbjct: 481 IVKLKFDWTIGTKRYVEDMEVLRELVPPSTVKYFELRGYHSTSF 524


>04_01_0256 +
           3402982-3402984,3403077-3403158,3403307-3403449,
           3403557-3403832,3404136-3404315
          Length = 227

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/103 (20%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
 Frame = +1

Query: 160 LASKQYCRLKMQTSCYSKVIIILAFILVHSVELQNFKENPVNKIILLESKNAPPYAQYMY 339
           +  K+  +LK++ +  ++V  +L      S+E +N+ +NP +  + +E +      + +Y
Sbjct: 1   MGDKKQVKLKVRGASETEVKNVLRQEFKESIEYRNYSKNPESSSLKVEVRGTVDVGK-LY 59

Query: 340 KNLHNVFNRFKIKFEIIYRSKADVETTIK-ITKLNRNSTVINI 465
           + L  + +  KI+  I    K ++E   K + ++ R    ++I
Sbjct: 60  ERLKKMASSVKIESVIPDDVKEEIERYKKDLERMKRQKEDLDI 102


>07_03_0139 +
           14143383-14143512,14143601-14144334,14144413-14144874,
           14144956-14145788,14145871-14146041,14146121-14146379,
           14146828-14146866,14147903-14147989
          Length = 904

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 420 CGFHVCFRSVDNFKFYFESIEYVMQIFIHILRIR 319
           CGFHVC       +   E +EY+M + IH+L +R
Sbjct: 849 CGFHVCHNMSTLLREVVE-VEYIMAL-IHLLLLR 880


>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 349 HNVFNRFKIKFEIIYRSKADVETTIKITKLNRN 447
           H  F RF++KF+   + K D    I++T  ++N
Sbjct: 11  HAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKN 43


>04_03_0262 +
           13597021-13597150,13597239-13597972,13598051-13598512,
           13598594-13599136,13599385-13599426,13599594-13599679,
           13599759-13600017,13600456-13600494,13603624-13603737
          Length = 802

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 420 CGFHVCFRSVDNFKFYFESIEYVMQIFIHILRIRR 316
           CGFHVC       +   E +EY+M + IH+ +I R
Sbjct: 738 CGFHVCHNMSTLLREVVE-VEYIMAL-IHLAQIGR 770


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,049,746
Number of Sequences: 37544
Number of extensions: 302255
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)