Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13h24
(687 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC115701-1|AAI15702.1| 828|Homo sapiens SLMAP protein protein. 32 1.7
BC114627-1|AAI14628.1| 790|Homo sapiens SLMAP protein protein. 32 1.7
AF304450-1|AAG41949.1| 359|Homo sapiens sarcolemmal associated ... 32 1.7
AB046821-1|BAB13427.1| 690|Homo sapiens KIAA1601 protein protein. 32 1.7
Z82208-3|CAI42770.1| 740|Homo sapiens BCL6 co-repressor-like 1 ... 32 2.2
Z82208-2|CAI42769.1| 1385|Homo sapiens BCL6 co-repressor-like 1 ... 32 2.2
Z82208-1|CAI42768.1| 1711|Homo sapiens BCL6 co-repressor-like 1 ... 32 2.2
AL136450-4|CAI42885.1| 1385|Homo sapiens BCL6 co-repressor-like ... 32 2.2
AL136450-3|CAI42884.1| 1711|Homo sapiens BCL6 co-repressor-like ... 32 2.2
AL096777-1|CAB46626.1| 723|Homo sapiens hypothetical protein pr... 32 2.2
AK074089-1|BAB84915.1| 1696|Homo sapiens FLJ00160 protein protein. 32 2.2
Z19588-1|CAA79636.1| 387|Homo sapiens snoI protein. 30 8.9
X15219-1|CAA33289.1| 684|Homo sapiens protein ( Human sno oncog... 30 8.9
X15217-1|CAA33287.1| 415|Homo sapiens protein ( Human sno oncog... 30 8.9
U70730-1|AAB65850.1| 638|Homo sapiens SnoN2 protein. 30 8.9
BC059386-1|AAH59386.1| 684|Homo sapiens SKI-like oncogene protein. 30 8.9
>BC115701-1|AAI15702.1| 828|Homo sapiens SLMAP protein protein.
Length = 828
Score = 32.3 bits (70), Expect = 1.7
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 241 VHSVELQNFKENPVNKIILLESKNAPPYAQYMYKNLHNVFNRFKIKFEIIYRSKADVETT 420
V S++ Q+ +++ K +L +++N Q Y+ V + K+KFE+ + K +
Sbjct: 722 VGSLKEQHLRDSADLKTLLSKAENQAKDVQKEYEKTQTVLSELKLKFEMTEQEKQSITDE 781
Query: 421 IKITKLN 441
+K K N
Sbjct: 782 LKQCKNN 788
>BC114627-1|AAI14628.1| 790|Homo sapiens SLMAP protein protein.
Length = 790
Score = 32.3 bits (70), Expect = 1.7
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 241 VHSVELQNFKENPVNKIILLESKNAPPYAQYMYKNLHNVFNRFKIKFEIIYRSKADVETT 420
V S++ Q+ +++ K +L +++N Q Y+ V + K+KFE+ + K +
Sbjct: 684 VGSLKEQHLRDSADLKTLLSKAENQAKDVQKEYEKTQTVLSELKLKFEMTEQEKQSITDE 743
Query: 421 IKITKLN 441
+K K N
Sbjct: 744 LKQCKNN 750
>AF304450-1|AAG41949.1| 359|Homo sapiens sarcolemmal associated
protein 1 protein.
Length = 359
Score = 32.3 bits (70), Expect = 1.7
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 241 VHSVELQNFKENPVNKIILLESKNAPPYAQYMYKNLHNVFNRFKIKFEIIYRSKADVETT 420
V S++ Q+ +++ K +L +++N Q Y+ V + K+KFE+ + K +
Sbjct: 256 VGSLKEQHLRDSADLKTLLSKAENQAKDVQKEYEKTQTVLSELKLKFEMTEQEKQSITDE 315
Query: 421 IKITKLN 441
+K K N
Sbjct: 316 LKQCKNN 322
>AB046821-1|BAB13427.1| 690|Homo sapiens KIAA1601 protein protein.
Length = 690
Score = 32.3 bits (70), Expect = 1.7
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 241 VHSVELQNFKENPVNKIILLESKNAPPYAQYMYKNLHNVFNRFKIKFEIIYRSKADVETT 420
V S++ Q+ +++ K +L +++N Q Y+ V + K+KFE+ + K +
Sbjct: 584 VGSLKEQHLRDSADLKTLLSKAENQAKDVQKEYEKTQTVLSELKLKFEMTEQEKQSITDE 643
Query: 421 IKITKLN 441
+K K N
Sbjct: 644 LKQCKNN 650
>Z82208-3|CAI42770.1| 740|Homo sapiens BCL6 co-repressor-like 1
protein.
Length = 740
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 28 SSIIDRSVKQHNVKLNLLFSCMVTTSITILRFPSVFRNSEPRLWL 162
S+++ RS + + SC+ +TS + FP + RN +P W+
Sbjct: 94 STVLSRSQRTTQAAGGNVTSCLGSTSSPFVIFPEIVRNGDPSTWV 138
>Z82208-2|CAI42769.1| 1385|Homo sapiens BCL6 co-repressor-like 1
protein.
Length = 1385
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 28 SSIIDRSVKQHNVKLNLLFSCMVTTSITILRFPSVFRNSEPRLWL 162
S+++ RS + + SC+ +TS + FP + RN +P W+
Sbjct: 259 STVLSRSQRTTQAAGGNVTSCLGSTSSPFVIFPEIVRNGDPSTWV 303
>Z82208-1|CAI42768.1| 1711|Homo sapiens BCL6 co-repressor-like 1
protein.
Length = 1711
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 28 SSIIDRSVKQHNVKLNLLFSCMVTTSITILRFPSVFRNSEPRLWL 162
S+++ RS + + SC+ +TS + FP + RN +P W+
Sbjct: 659 STVLSRSQRTTQAAGGNVTSCLGSTSSPFVIFPEIVRNGDPSTWV 703
>AL136450-4|CAI42885.1| 1385|Homo sapiens BCL6 co-repressor-like 1
protein.
Length = 1385
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 28 SSIIDRSVKQHNVKLNLLFSCMVTTSITILRFPSVFRNSEPRLWL 162
S+++ RS + + SC+ +TS + FP + RN +P W+
Sbjct: 259 STVLSRSQRTTQAAGGNVTSCLGSTSSPFVIFPEIVRNGDPSTWV 303
>AL136450-3|CAI42884.1| 1711|Homo sapiens BCL6 co-repressor-like 1
protein.
Length = 1711
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 28 SSIIDRSVKQHNVKLNLLFSCMVTTSITILRFPSVFRNSEPRLWL 162
S+++ RS + + SC+ +TS + FP + RN +P W+
Sbjct: 659 STVLSRSQRTTQAAGGNVTSCLGSTSSPFVIFPEIVRNGDPSTWV 703
>AL096777-1|CAB46626.1| 723|Homo sapiens hypothetical protein
protein.
Length = 723
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 28 SSIIDRSVKQHNVKLNLLFSCMVTTSITILRFPSVFRNSEPRLWL 162
S+++ RS + + SC+ +TS + FP + RN +P W+
Sbjct: 77 STVLSRSQRTTQAAGGNVTSCLGSTSSPFVIFPEIVRNGDPSTWV 121
>AK074089-1|BAB84915.1| 1696|Homo sapiens FLJ00160 protein protein.
Length = 1696
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 28 SSIIDRSVKQHNVKLNLLFSCMVTTSITILRFPSVFRNSEPRLWL 162
S+++ RS + + SC+ +TS + FP + RN +P W+
Sbjct: 644 STVLSRSQRTTQAAGGNVTSCLGSTSSPFVIFPEIVRNGDPSTWV 688
>Z19588-1|CAA79636.1| 387|Homo sapiens snoI protein.
Length = 387
Score = 29.9 bits (64), Expect = 8.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 389 IISNFILNRLNTLCRFLYIYCA 324
++ F L ++NT+C LYIYC+
Sbjct: 162 VLREFTLQQINTVCDELYIYCS 183
>X15219-1|CAA33289.1| 684|Homo sapiens protein ( Human sno oncogene
mRNA for snoN protein, ski-related. ).
Length = 684
Score = 29.9 bits (64), Expect = 8.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 389 IISNFILNRLNTLCRFLYIYCA 324
++ F L ++NT+C LYIYC+
Sbjct: 174 VLREFTLQQINTVCDELYIYCS 195
>X15217-1|CAA33287.1| 415|Homo sapiens protein ( Human sno oncogene
mRNA for snoA protein, ski-related. ).
Length = 415
Score = 29.9 bits (64), Expect = 8.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 389 IISNFILNRLNTLCRFLYIYCA 324
++ F L ++NT+C LYIYC+
Sbjct: 174 VLREFTLQQINTVCDELYIYCS 195
>U70730-1|AAB65850.1| 638|Homo sapiens SnoN2 protein.
Length = 638
Score = 29.9 bits (64), Expect = 8.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 389 IISNFILNRLNTLCRFLYIYCA 324
++ F L ++NT+C LYIYC+
Sbjct: 174 VLREFTLQQINTVCDELYIYCS 195
>BC059386-1|AAH59386.1| 684|Homo sapiens SKI-like oncogene protein.
Length = 684
Score = 29.9 bits (64), Expect = 8.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 389 IISNFILNRLNTLCRFLYIYCA 324
++ F L ++NT+C LYIYC+
Sbjct: 174 VLREFTLQQINTVCDELYIYCS 195
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,277,623
Number of Sequences: 237096
Number of extensions: 1761797
Number of successful extensions: 3545
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3545
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -