Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h18
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    29   0.89 
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    29   0.89 
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    28   1.6  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    28   1.6  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.7  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   2.7  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   3.6  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    27   3.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   6.3  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   6.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   8.3  

>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
 Frame = -2

Query: 405 VNDRRGKALHDYVESSELVCLNDDTITTFAPFGQQGNVLDLVFASPALSSSCTVSVLD-D 229
           +N+        YV S +     DDT+ T  P     N+L       A SS  T+ V+  +
Sbjct: 488 INENLAALNPGYVTSDDFGEDGDDTVHTSVPSYATPNILQAQAGFNATSSPETIDVVFLN 547

Query: 228 LLSSNHFPLFIEVFNDAFISSFGPTTFSINQVDTLDNTSLANINFNKIDWS 76
            L S        + ND   +S   T + +   D  D++  +   F + +WS
Sbjct: 548 FLQSIVLKALNNMANDTLYTSSNVTQYWVRD-DGYDSSPYSFAYFVQQEWS 597


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 228  LLSSNHFPLFIEVFNDAFISSFGPTTFSINQVDTLDNTSLANINFNKIDWSKFNKL 61
            +L S    LFI V  +  + S        N   T   TSLAN+N + + +  F +L
Sbjct: 955  ILDSQTHSLFIHVTTNTHLGSEWGDILKSNSNGTYFMTSLANVNRDSVGYVDFERL 1010


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 357 ELVCLNDDTITTFAPFGQQGNVLDLVFASPALSSSCTVSVLD--DLLSSNHFPLFIE 193
           +++ LND   T     G  G VLDL     A  S CT  V+D  D L S  F   IE
Sbjct: 155 DIIRLND---TVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIE 208


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -2

Query: 414 SSRVNDRRGKALHDYVESSELVCLNDDTITTFAPFGQQGNVLDLVFASPAL 262
           SS+++D+  K  H+  ESS        + TT  PF + G+     FASPAL
Sbjct: 351 SSKIHDKSLKRKHEDDESSTST---KSSRTTKTPFTRVGDPSQWDFASPAL 398


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 372 YVESSELVCLNDDTITTFAPFGQQGNVLDLVFASPALSSSCTVSVLDDLLSSNHF 208
           Y  S   VC N  +     PF  QGN+  +V   P L  S    +  + L  +HF
Sbjct: 329 YKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVAPLPGLGPSTAEPIAVEDLLRDHF 383


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 450 IIGDFNAHHASWSSRVNDRRGKAL 379
           ++G+F+ +H  WS  V +R G +L
Sbjct: 267 VVGEFSGNHGIWSLTVGERCGLSL 290


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 255 SCTVSVLDDLLSSNHFPLFIEVFNDAFISSFGPTTFSINQVDTLDNTSLANI 100
           SC  S L   L S ++P  ++  NDA    F   TFS+N   T D   +  I
Sbjct: 235 SCLPSALQSQLQSFNYPPSLKKLNDAKAHVF---TFSMNYYMTRDPLEMIQI 283


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 450 IIGD-FNAHHASWSSRVNDRRGKALHDYVE 364
           IIGD   A H  W  RV+D  G     Y++
Sbjct: 132 IIGDSLQARHDEWGGRVHDTLGTRCDPYID 161


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 609  ISQYHFQNILITIYINNFSF 550
            IS Y F N+ IT+  +NFS+
Sbjct: 1492 ISMYIFVNMFITVVFDNFSY 1511


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 516 NGKFTINLLKDSCSKFVSNNYLIIGDFNAHHASWSSRVNDRRGKALHDYVESSEL 352
           NGK  IN  +   S+F   NY    D  A  + W+   +DR    L D   S+++
Sbjct: 715 NGKVNINWPQKRISEFFQKNY--DWDLLASRSIWAFGPDDRGTNILRDDTLSTDV 767


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 168 SFGPTTFSINQVDTLDNTSLANINFNKID 82
           S GP  F+I +  T D   +A+  FN++D
Sbjct: 731 SDGPRKFTIEKAGTPDQLPVAHTCFNRLD 759


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,339
Number of Sequences: 5004
Number of extensions: 55863
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)