Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h16
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.61 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.3  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   9.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 211 RSPAPCTK*LGVCFRYQNGQVHSQL 285
           R+P+ C++       Y NGQ HSQL
Sbjct: 360 RTPSKCSQ---TSVHYSNGQTHSQL 381


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 478 IGCGSKRITCNPENPPC 528
           IGC +++  C+  + PC
Sbjct: 91  IGCSAEKFECSKTSNPC 107


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 445 FYLLVICVLEVIGCGSKRITCNPENPPCKK*VCRR 549
           F+L VI +       +  I CN +    K  +CR+
Sbjct: 10  FFLSVILITSYFVTPTMSIKCNCKRHVIKPHICRK 44


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 412 VMSAWKPLVAAFYLLVICVLEV 477
           +M  W PLV   Y     +LE+
Sbjct: 210 IMMYWFPLVVIIYTYTSILLEI 231


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -1

Query: 498  TFAPASDDFQHADHQ*IKSSY*RLPSAHHFGNFQFLKGPRLQG 370
            T++P   + +H D Q     Y    S++   NF  + G   +G
Sbjct: 1026 TWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1068


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 72  CSERRKHGHHVLNNGSCPPMRPAR 143
           CS R K GH    +G    + P +
Sbjct: 589 CSARNKQGHSARRSGDVAVIVPPK 612



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -1

Query: 498  TFAPASDDFQHADHQ*IKSSY*RLPSAHHFGNFQFLKGPRLQG 370
            T++P   + +H D Q     Y    S++   NF  + G   +G
Sbjct: 1022 TWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1064


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,891
Number of Sequences: 438
Number of extensions: 3795
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)