Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13h13
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 171 6e-44
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 33 0.038
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 31 0.15
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 30 0.20
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 30 0.27
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 29 0.36
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 29 0.47
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 28 1.1
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 28 1.1
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 1.4
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 27 1.4
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.4
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.9
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 1.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 1.9
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.5
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 2.5
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 4.4
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.4
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 4.4
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 4.4
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 25 5.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 5.8
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 5.8
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 25 5.8
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 25 7.7
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 25 7.7
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 7.7
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 25 7.7
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 7.7
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 171 bits (416), Expect = 6e-44
Identities = 82/145 (56%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Frame = +2
Query: 131 DGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVN 310
+G + + +E+L DE+ SRTRLL+N+IK+MKSE R++HE +KIKEN EKI N
Sbjct: 22 EGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNN 81
Query: 311 KTLPYLVSNVIELLDVDPQE-EEEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDA 487
K LPYLV NV+E+LD+ P E + ++ A + ++ R GK AVIKTSTRQT FLP+IGLV+
Sbjct: 82 KMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEP 141
Query: 488 EKLKPGDLVGVNKDSYLILETLPAE 562
E+L PGDL+GVNKDSYLI++ LP+E
Sbjct: 142 EELHPGDLIGVNKDSYLIIDKLPSE 166
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 32.7 bits (71), Expect = 0.038
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Frame = +2
Query: 200 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 379
L N ++ ++ V + ++Q I + T+ ++ + ++ + LL + Q +E
Sbjct: 5 LKTNVLQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQE 64
Query: 380 DGAVVDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLP 556
G+ V + GK V +K Y + + +D +++KP V + DSY +++ LP
Sbjct: 65 PGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILP 124
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 30.7 bits (66), Expect = 0.15
Identities = 16/71 (22%), Positives = 37/71 (52%)
Frame = +2
Query: 143 ALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLP 322
ALS+ + +PT+ +LL ++M ++ +++ D + E +K +++ LP
Sbjct: 406 ALSQIAVEIPTEVSKHHAQLLPLVFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLP 465
Query: 323 YLVSNVIELLD 355
L+ ++ LL+
Sbjct: 466 MLMERLVGLLE 476
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 30.3 bits (65), Expect = 0.20
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 206 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDG 385
DNE K MK E + + Q + ++ + ++K+K K ++ + EEEED
Sbjct: 89 DNEAKKMKREKEILRQQRQKRKSELTQLSQKVK-EKFKKMRKKPARRIVTIANDEEEEDD 147
Query: 386 AVVDLDS-QRKGKCAVIK 436
+D D+ +RK +K
Sbjct: 148 QTMDEDAFERKSMQGELK 165
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 29.9 bits (64), Expect = 0.27
Identities = 29/130 (22%), Positives = 53/130 (40%)
Frame = +2
Query: 104 TLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIK 283
T E E +L EEV R PTD+ + D + + K+E + I Q ++IK
Sbjct: 702 TAEKPFTTEKPLSSLPEEVSRQPTDDKGEQVSNADVDSGLSKTERLTIQ-----QTNEIK 756
Query: 284 ENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTYFL 463
+ LP SN E + + + ++ L+SQ + +++ +
Sbjct: 757 HVPTNTTSSVKLPQQPSNEDEKERITTADYADSTSLERLESQEPNRNELVQVGSSNAGNT 816
Query: 464 PVIGLVDAEK 493
+G+ + EK
Sbjct: 817 TSVGMNEHEK 826
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 29.5 bits (63), Expect = 0.36
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +2
Query: 110 EDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKEN 289
+DK+ E E +S + + E +++ + NE+K+ K + + ++ N KE+
Sbjct: 824 QDKNQIETLNERISAAADELSSMESINKNQA--NELKLAKQKCSNLQEKINFGNKLAKEH 881
Query: 290 TEKI 301
TEKI
Sbjct: 882 TEKI 885
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 29.1 bits (62), Expect = 0.47
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 439 FNPANIFLARHRLGRCRETQTRRLGRSQQRLLFDLRNAP 555
F+ +FL R CR+ RR +++Q LL++ R+AP
Sbjct: 298 FHKLRLFLMERRYYYCRQRSVRRKEKTRQLLLYE-RSAP 335
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 122 IWEDGEEALSEEVLRMPTDEIVSRTRLLDN 211
++ DGE+ L E+ ++PT+ I S T DN
Sbjct: 324 LFVDGEKGLRSELSQIPTENIDSTTDRFDN 353
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 200 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 379
L+D +IM++E R + ++ + I + + N +LP+ I+L+D + E
Sbjct: 1114 LIDGHSEIMENERRRPKYRIRLSGNPILGDGKSDNQNMSLPFYRGEYIQLIDANQDNYLE 1173
Query: 380 D 382
+
Sbjct: 1174 E 1174
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.5 bits (58), Expect = 1.4
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +2
Query: 59 KDYYEKTNHNITMATT--LEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKS 232
++ E+ H++++ +ED++I +DGE A++E+ R + S T+ ++K K+
Sbjct: 134 EEIIEQAQHDVSLRNLSGIEDENIIDDGETAINEQKKR--EANVFSDTQSAP-QLKSGKA 190
Query: 233 EVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVV 394
+ N K N + +V V++ + +D PQE+ + +V
Sbjct: 191 LPADFENPYNLSNSKPVNNNNEDRVE-----AVTSENKSIDSAPQEKNHEYEIV 239
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -3
Query: 523 VDSY--QVSWFEFLCIYQADDG 464
VD+Y SW+E LC Y A+DG
Sbjct: 75 VDNYILSYSWYERLCSYLAEDG 96
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.4
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 113 DKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENT 292
DKS ++ E+ L + R+ ++ V +R+ + K SE+ LQ QN+ K++
Sbjct: 139 DKSFRKNMEDEL--RITRLASENNVLISRI--DRTKRHFSELFTQKQMLQLQNENFKDDY 194
Query: 293 EKIK-VNKTL 319
EKIK NK L
Sbjct: 195 EKIKEENKRL 204
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 375 KKTAPLSI*THSVKGNAL*SRLQPGKHISCPSSAW 479
+K AP + TH K N+L S +P S S +W
Sbjct: 352 RKLAPPFLRTHKAKSNSLFSMKRPSSSSSSLSGSW 386
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 206 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELL---DVDPQEEE 376
DN++ +++ +M + + N+K+ E + +KTL ++ S ++ L DV EE
Sbjct: 700 DNDMASLEAPMMSHNTDTDTLNNKLNEKDNVVFEDKTLQHVASEIVPNLPPADVGELNEE 759
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 218 KIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVI 343
+++ +E+ R+S L Q ++ +TEK ++N L SNV+
Sbjct: 1128 EMLNAELQRVSQSLPPQMSRVVHDTEK-RLNMLFDRLNSNVL 1168
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 2.5
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +2
Query: 170 PTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIEL 349
P+ EI S+ DNE ++ + + IS+E +ND +E E N+ S+
Sbjct: 61 PSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTTEE-AETSSGNEAADDEDSSSDAQ 119
Query: 350 LDVDPQEEEEDG-AVVDLDSQRK 415
V E DG + +LD +RK
Sbjct: 120 SSVPSFSEIHDGMSEEELDKERK 142
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 350 LDVDPQEEEEDGAVVDLDSQRKGKCAVIKTST 445
++VD +EEED V D D VI ST
Sbjct: 250 VEVDDDDEEEDEVVTDDDGTSNADSEVITAST 281
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/61 (18%), Positives = 29/61 (47%)
Frame = +2
Query: 200 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 379
L+D IM++ R + ++ + I + + N ++PY+ ++++D + E
Sbjct: 932 LIDGHCPIMENGKRRPKYRIRLSGNPILGDGKSDNQNMSIPYIRGEYVQMIDANQDNYLE 991
Query: 380 D 382
+
Sbjct: 992 E 992
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/65 (21%), Positives = 34/65 (52%)
Frame = +2
Query: 209 NEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGA 388
N + + ++ + ++Q + I +EK++ + + S + E L+++ QEE+ +
Sbjct: 196 NGLSVKLPNILTMDEQIQRLKEAIA--SEKLQQEERSQIIKSLMEEELEINEQEEKIKHS 253
Query: 389 VVDLD 403
+DLD
Sbjct: 254 FIDLD 258
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 50 LNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRL 202
+ LKDY + T+ L D+ I DG++ E++ + EI +T L
Sbjct: 848 ITLKDYVDSFKPTNTVIKPLGDRDIMPDGQQLF--ELMATYSVEISEKTEL 896
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +2
Query: 92 TMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMR---ISHELQ 262
T+ L+D +IW D S R+ + R + ++ +++ + I + +Q
Sbjct: 300 TVGLMLQDNAIWSDYPRVWSAFCGRLNDKSVACRIKCIEVASNALQNSLATSEIIENVVQ 359
Query: 263 AQNDKIKENTEKIKV 307
K+ + EK++V
Sbjct: 360 MLQSKLADTDEKVRV 374
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -3
Query: 229 LHYFDFIVQKSGSTYDFISWHAK---NFLTESFLAILPN*LV 113
L + D ++K G+T FI WH N S +I+ N ++
Sbjct: 39 LRHVDIEMKKQGNTIKFIVWHGSRKHNACIRSVYSIINNMII 80
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 5.8
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Frame = +2
Query: 44 ELLNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRL--LDNEI 217
ELLNLK + T LE+ ++ LS +VL++ T+EI L L+ EI
Sbjct: 390 ELLNLKSNNSSVDGVKTRRQLLEENAL-------LSHKVLKL-TEEIQDLETLNQLNTEI 441
Query: 218 KIMKSEVM-RISHELQAQNDKIKENTEKIKVNKTLPYLVS-NVIELLDVDPQEEEEDGAV 391
+ +SE + + E Q + + + + K L +S + ELL ++ + E+ + +
Sbjct: 442 EARQSEKLNEVQEETQRLSQLLISSQPALTEVKHLKLCLSDSQEELLQLNAKLEKANIVI 501
Query: 392 VDLDSQR 412
+L+S +
Sbjct: 502 DELNSAK 508
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 131 DGEEALSEEVLRMPTDEI--VSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIK 304
D + L +L+ +DE+ ++ T L+DN ++ ++ +S + + I E++
Sbjct: 307 DSKGNLDVSLLKSLSDEVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMA 366
Query: 305 VNKTLPYL 328
++ PY+
Sbjct: 367 YDEENPYV 374
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 125 WEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQN 271
W++G + +E++ D +V + + + +KSEV ++ E+ QN
Sbjct: 141 WKNGLDKNNEKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQN 189
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 65 YYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSR 193
YY K N N ++D ++W DG E + E ++R
Sbjct: 199 YYHKNNRNPIDWKLVQDCAMWPDGYPGTGRESEKGSNLEAITR 241
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 7.7
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = +2
Query: 62 DYYE-KTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEV 238
DY K+ ++ AT +++ +WE ++ EE++ P E + L E K M +E
Sbjct: 40 DYQNIKSANDYDTATRWQNQFVWELARHSVGEEIVVYPKFE-----KYLGEEGKEM-AEK 93
Query: 239 MRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 379
R H+L + K + K + +P L ++E L EEE+
Sbjct: 94 DRHEHQL-VKEMLYKFQSMKANQSNFIPAL-DELMESLQKHIDEEEQ 138
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 23 VKCVWVXELLNLKDYYEKTNHNI 91
VK +WV L NL+DY +KT N+
Sbjct: 876 VKHLWV--LANLRDYVKKTKINL 896
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 107 LEDKSIWEDG---EEALSEEVLRMPTDEIVSRTRLLDNEIKI 223
+ DK WE+ +E + R+PTD+ +++ N +K+
Sbjct: 462 VHDKKSWEEMNAIQEYFQRPITRVPTDDYEELEKVVKNALKM 503
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/82 (19%), Positives = 32/82 (39%)
Frame = +2
Query: 71 EKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRIS 250
E +H++ +DK + DG +E + S+ R++ N+ +V+
Sbjct: 68 EDISHSLPSIVHEDDKLVGSDGVSTTPDEYFEQQSTRSRSKPRIISNKETTTSKDVVHPV 127
Query: 251 HELQAQNDKIKENTEKIKVNKT 316
ND + K V++T
Sbjct: 128 KTENFANDLDTTSDSKPVVHQT 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,954
Number of Sequences: 5004
Number of extensions: 35550
Number of successful extensions: 161
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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