Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13h12
(252 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz... 27 0.38
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 0.50
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 25 2.0
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 2.0
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 24 2.7
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 24 2.7
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 24 2.7
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 24 3.5
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 24 3.5
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 23 4.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 23 6.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 23 6.2
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 23 8.2
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 23 8.2
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 23 8.2
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 23 8.2
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 23 8.2
>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
L27|Schizosaccharomyces pombe|chr 1|||Manual
Length = 93
Score = 27.1 bits (57), Expect = 0.38
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -1
Query: 249 PMSTKVGISFHKGANR-LNGERFSHGN--VNWSSV 154
PM+TK+G ++KG G++ HG V WS V
Sbjct: 14 PMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRV 48
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 26.6 bits (56), Expect = 0.50
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 140 QPVSITDDQFTFPWLNLSPFSLFAPL-WKLIPTF 238
+P +ITDD P N L +PL W +I ++
Sbjct: 1058 EPYAITDDNDYLPMANTGSLDLVSPLTWTVIDSY 1091
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 24.6 bits (51), Expect = 2.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 244 VHKSGDQLPQRSKQTEWRKVQPWERELV 161
+H+S D + +R + W +V P ++LV
Sbjct: 252 LHRSFDVIVRRQLDSVWHRVSPKTKQLV 279
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 2.0
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -1
Query: 252 GPMSTKVGISFHKGANRLNGERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKAMK 73
G + VGI+ A + NG+R G+V++ S + +IT + +TVA + +
Sbjct: 257 GSVVVDVGIN----AVQRNGKRVLVGDVHFESASKVASSITPVPGGVGPMTVAMLMENIV 312
Query: 72 TAKR--RGENIFLDI 34
A + R ENI+ I
Sbjct: 313 NAAKIARTENIYRKI 327
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 24.2 bits (50), Expect = 2.7
Identities = 6/21 (28%), Positives = 12/21 (57%)
Frame = -3
Query: 217 QRSKQTEWRKVQPWERELVIC 155
Q QT+W + P + + ++C
Sbjct: 192 QNKIQTDWSSIDPMDNDKIVC 212
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 2.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 186 FSHGNVNWSSVMETGCAITSLSRAGKAV 103
FSHG WS ++ G T S KAV
Sbjct: 155 FSHGRKPWSGILLYGPPGTGKSYLAKAV 182
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 24.2 bits (50), Expect = 2.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 102 TVAKPAKAMKTAKRRGENIFLDIRVSNSSM 13
TVA P + + K+ ++FLD VS++S+
Sbjct: 399 TVASPESSCNSMKQCSLHLFLDPHVSHASI 428
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 23.8 bits (49), Expect = 3.5
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +2
Query: 32 RISKKMFSPRLFAVFIAFAGFATVTALPARDKEVIAQPVSITDDQFTFPWLNLSP 196
++SK+ F + V + F L R + QP + + +FPW P
Sbjct: 300 KLSKRFFQDSVI-VLVEFLNQEFANTLLKRIIDAERQPTPMHSSEVSFPWKTAIP 353
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 23.8 bits (49), Expect = 3.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 93 KPAKAMKTAKRRGENIFLDIRVSNSSMQL 7
KP+K K+ + N FLD + S +QL
Sbjct: 30 KPSKQKKSKESNTGNGFLDAKTSKKILQL 58
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 23.4 bits (48), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 114 LPGTKKLSRSPSPLQMTSSRSH 179
L +KL SP+ +Q+ S RSH
Sbjct: 571 LLNVRKLISSPAIIQLVSKRSH 592
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 23.0 bits (47), Expect = 6.2
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = -3
Query: 178 WERELVICNGDGLRDNFFVPG 116
W + + +C + NFF+PG
Sbjct: 321 WAKSVRLCANRFNKSNFFIPG 341
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.0 bits (47), Expect = 6.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 205 QTEWRKVQPWERELVICNGDGLRDNFFVPGRQSR 104
Q EW P +++ +G LRD F +PG R
Sbjct: 2020 QWEWNTETPSGADILSRHGALLRDLFPLPGLSRR 2053
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 22.6 bits (46), Expect = 8.2
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = -3
Query: 238 KSGDQLPQRSKQTEWRKVQPWERELVICNGDGLRDNFFVPGRQSRYRCETGESDENR 68
++G+ P + TE + + W+R + +G+ N PG S +G++ +R
Sbjct: 163 RAGNTGPLVANSTE--EFEAWKRMMKASSGEAGAGNVITPGVTSTTGAPSGKASLSR 217
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 22.6 bits (46), Expect = 8.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 173 FPWLNLSPFSLFAPL 217
FPWL + F L+ P+
Sbjct: 302 FPWLKKNSFCLYLPI 316
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 169 ELVICNGDGLRDNFFVPGRQSRYR 98
E+V C+ D L + PGR + YR
Sbjct: 542 EIVFCDADNLNTDGIYPGRYT-YR 564
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 22.6 bits (46), Expect = 8.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 23 FETRISKKMFSPRLFAVFIAFAGFATVTALPARDKEVIAQP 145
FE S F P+ + + + AT+ A+P+ D+ V+ P
Sbjct: 135 FEGTGSSPNFPPQNQFLSDSRSSIATLNAIPSLDQSVLLNP 175
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 22.6 bits (46), Expect = 8.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 69 RFSSLSPVSQR*RLCLPGTKKLSRSPSPL 155
R S SP S R RL + + SRSPSPL
Sbjct: 756 RSFSRSP-SYRRRLSMSCSVSYSRSPSPL 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,023,246
Number of Sequences: 5004
Number of extensions: 17310
Number of successful extensions: 64
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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