Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13h12
(252 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0683 - 23490215-23490997 28 1.2
01_01_0826 + 6431621-6431917,6432356-6432505,6432614-6432796,643... 27 1.6
05_03_0070 - 8023343-8023528,8023606-8023639,8024013-8024058,802... 27 2.1
12_02_0338 - 17712076-17712261,17712339-17712431,17712533-177125... 27 2.8
01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456... 26 3.7
01_01_1154 - 9178427-9178738,9179819-9180874 26 3.7
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 26 4.8
03_01_0592 + 4372190-4372325,4373646-4373704,4374245-4374355,437... 26 4.8
01_03_0009 + 11601394-11601666,11602486-11602683,11602809-116030... 26 4.8
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 25 6.4
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 25 6.4
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 25 6.4
02_03_0127 + 15547048-15547302,15547511-15548459,15548562-155486... 25 6.4
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 25 8.4
09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,495... 25 8.4
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563... 25 8.4
04_01_0349 - 4570071-4571267 25 8.4
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152... 25 8.4
>06_03_0683 - 23490215-23490997
Length = 260
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = -1
Query: 153 METGCAITSLSRAGKAVTVAKPAKAMKTAKRRGENIFLDIRVSNS 19
++TG ++L++ + +T K + + +R E I++D+R+ S
Sbjct: 76 IKTGMPTSTLTKHLRGLTSKGVLKVVNSVHKRAEKIYMDVRIDPS 120
>01_01_0826 +
6431621-6431917,6432356-6432505,6432614-6432796,
6433305-6433385,6433548-6433586,6433646-6433849,
6433933-6434073,6434270-6434437,6434498-6434518
Length = 427
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 168 NWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTAKRRGE-NIFLDIRVSNSS 16
N S ME I L RAG VTVA ++ RR + N+ DI V ++
Sbjct: 257 NGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAA 308
>05_03_0070 -
8023343-8023528,8023606-8023639,8024013-8024058,
8024139-8024389,8024473-8026001,8026128-8026496,
8026582-8026821
Length = 884
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = -3
Query: 238 KSGDQLPQRSKQTEWRKVQPWERELVICNGDGLRDNFFVPGRQSRYRCETGESDENRKE 62
K G+ P+RSKQ +KV P + + V N G + + R ++ + GE NRK+
Sbjct: 78 KEGEMAPRRSKQEPKKKV-PSKDDDVPANTTGTKKS----ERSAKAKKRKGERSVNRKD 131
>12_02_0338 -
17712076-17712261,17712339-17712431,17712533-17712593,
17712681-17712791,17712872-17713123,17713207-17714543,
17714649-17715317,17715403-17715642
Length = 982
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = -3
Query: 238 KSGDQLPQRSKQTEWRKVQPWERELVICNGDGLRDNFFVPGRQSRYRCETGESDENRKE 62
K G+ P+RSKQ +KV P + + V N G + + R ++ + GE NRK+
Sbjct: 78 KEGETAPRRSKQQPKKKV-PSKDDDVPANTTGTKKS----ERSAKAKKRKGERSVNRKD 131
>01_07_0227 +
42144437-42144446,42145059-42145428,42145528-42145649,
42145767-42145935,42146236-42146545,42146742-42146825,
42147012-42147083,42147780-42147821,42147931-42148020,
42148106-42148213,42148292-42148384,42148540-42148619,
42148701-42148953,42151222-42151236
Length = 605
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 216 KGANRLNGERFSHGNVNWSSVMETGCAITSLSRAGKAVTVA 94
+G + L + HGN+NW S++ + L+ K T++
Sbjct: 131 EGLDFLRKNKLYHGNLNWDSILYLQPSTVKLANFRKQETMS 171
>01_01_1154 - 9178427-9178738,9179819-9180874
Length = 455
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 135 ITSLSRAGKAVTVAKPAKAMKTAKRRGENIFLDIRVSNSSMQLE 4
+TSL A T ++PA A +A R+ + LD R S+ L+
Sbjct: 14 LTSLDLATSPATASRPAAAAASALRKRPVLLLDQRHHPSTPNLD 57
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 99 VAKPAKAMKTAKRRGENIFLDIRV 28
V +PAK + TA+ R + I D+R+
Sbjct: 506 VGEPAKKLHTARSRNDQIVTDLRL 529
>03_01_0592 +
4372190-4372325,4373646-4373704,4374245-4374355,
4374441-4374800
Length = 221
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 169 ELVICNGDGLRDNFFVPGRQSRYRCETGESDENRKETR 56
E ++ + GL DNF + +Y C +G NR+ +
Sbjct: 90 ENMLLSSQGLPDNFTDEATKDQYLCNSGLQAANRESKK 127
>01_03_0009 +
11601394-11601666,11602486-11602683,11602809-11603081,
11603493-11603595,11603666-11603784,11604038-11604214,
11604443-11605192
Length = 630
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 47 MFSPRLFAVFIAFAGFATVTALPARDKEVIAQPV-SITDDQFTFPWLNL 190
+FS + F VF+ AGF+ L K I +P +I D+ T +L L
Sbjct: 129 LFSKKPFPVFLELAGFSPEDVLIEEPKAGILKPAHTILRDECTKSFLVL 177
>09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 177 GNVNWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTAKRRGEN 49
G NW V GC + +S AV A P+ + K+ E+
Sbjct: 1059 GIENWGRVPALGCTSSFISDLADAVVEALPSASALVTKKVDES 1101
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +1
Query: 169 HVPMAEPFAI-QSVCSFVEAD 228
HVPM EP I S C V AD
Sbjct: 1336 HVPMQEPLRIASSCCEIVNAD 1356
>02_05_0481 +
29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 25.4 bits (53), Expect = 6.4
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 59 RLFAVFIAFAGFATVTALPARDKEVIAQPVSITDDQFTFPW--LNLSPF--SLFAPLWKL 226
R F VF TVT R K + + ++ T +QF F + L LSP S+ A +W L
Sbjct: 575 RAFVVFTLIFIIETVTVAVHRPKPI--KVINATHEQFEFGFSILLLSPVVCSIMAFIWSL 632
>02_03_0127 +
15547048-15547302,15547511-15548459,15548562-15548677,
15548784-15548890,15550639-15550873,15550957-15551011,
15551802-15551893
Length = 602
Score = 25.4 bits (53), Expect = 6.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 21 SLKHVYPRKCSHRVSLRFSSLSPVSQR*RLCLPGTKKLSRSPSPLQMTSS 170
SLK PRK S ++LRF + V + +L PG ++ S S + TSS
Sbjct: 438 SLKASVPRKSSTVIALRFQNTQQVYIQDKLG-PGFGEVCSSDSLQRCTSS 486
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 223 LPQRSKQTEWRKVQPWERELVICNGD 146
+P R W VQP E +V+ GD
Sbjct: 203 IPNRGGDGRWIDVQPVENAIVVNTGD 228
>09_02_0146 +
4953007-4953297,4954105-4954341,4954592-4954669,
4954991-4955167,4955705-4955761,4955988-4956174,
4956910-4957055,4957213-4957395,4957860-4957970,
4959386-4959505,4959596-4959740,4960001-4960164,
4960816-4960902,4961062-4961390,4963426-4963507,
4963616-4963746,4963976-4964225,4965112-4965393,
4966780-4966986
Length = 1087
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 195 GERFSHGNVNWSSVMETGCAITSLSRAGKAVTVA 94
G+ F H N W + +TG + TS ++ V V+
Sbjct: 219 GQFFLHVNEEWRNGYKTGLSRTSSAKLSNVVVVS 252
>05_05_0285 -
23855219-23855371,23855391-23856063,23856239-23856301,
23856478-23856604,23856751-23856897,23856968-23856974,
23857203-23857379
Length = 448
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 250 PDVHKSGDQLPQRSKQTEWRKVQPWERELVICNGDGLRDN-FFVPGRQSRYRCETGESDE 74
PDVH +G S + + P +R++ C G +N + GR +R C +S
Sbjct: 33 PDVHIAGTGA---SAERSEPALSPPDRQIEFCGGLNTPENCAIIQGRANR-NCAIIQSRA 88
Query: 73 NRKE 62
NR++
Sbjct: 89 NRRD 92
>04_01_0349 - 4570071-4571267
Length = 398
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = +2
Query: 104 TALPARDKEVIAQPVSITDDQFTF-----PWLNLSPFSLFAPLWKL 226
+ LP E+IA+ + D +F PW PF+ FAPL L
Sbjct: 12 SGLPRELLEIIAKKLPSGHDAASFRSVCSPWRAALPFARFAPLLML 57
>02_04_0532 +
23711530-23711755,23712984-23713093,23713204-23715298,
23716092-23716153,23716236-23716277,23716614-23716673,
23716873-23717010,23717333-23717374,23717452-23717574
Length = 965
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -3
Query: 157 CNGDGLRDNFFVPGRQSRYRCETGESDENRKE 62
C GD + DNF Q YR T + KE
Sbjct: 115 CMGDEMGDNFISLEEQEEYRTMTAMRFKTEKE 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,839,654
Number of Sequences: 37544
Number of extensions: 120498
Number of successful extensions: 372
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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