Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h10
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0235 - 26609049-26609468,26610068-26610343,26611579-266117...    29   1.4  
01_06_0463 + 29567339-29567644,29568416-29568835                       27   4.2  
11_01_0724 + 5981680-5981748,5982301-5982397,5982496-5982593,598...    27   7.3  
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749...    27   7.3  

>05_06_0235 -
           26609049-26609468,26610068-26610343,26611579-26611746,
           26611850-26611945
          Length = 319

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +1

Query: 52  VFASAHNVIELWRGG*KDQLEMKLPFNIVLTPI-----LKPYLGNI 174
           V +S++ + ELW  G  DQ   + P  IV TP+     L PY+G++
Sbjct: 97  VVSSSNEMQELWPLGEVDQKGTRFPCCIVWTPLPVVSWLAPYIGHV 142


>01_06_0463 + 29567339-29567644,29568416-29568835
          Length = 241

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +1

Query: 58  ASAHNVIELWRGG*KDQLEMKLPFNIVLTPI-----LKPYLGNIKSCCQHYTFI 204
           +S++++ ELW  G  D    + P  IV TP+     L PY+G+   C +  T +
Sbjct: 21  SSSNSLQELWPVGEIDPKRARFPCCIVWTPLPIVSWLAPYIGHAGICREDGTVL 74


>11_01_0724 +
           5981680-5981748,5982301-5982397,5982496-5982593,
           5983535-5983690,5983986-5984063,5984135-5984266,
           5984856-5984936,5985442-5985510,5985597-5985686,
           5986001-5986145,5986218-5986276,5986384-5986479,
           5986561-5986628,5986704-5986803,5986910-5986966,
           5987179-5987337
          Length = 517

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/72 (20%), Positives = 36/72 (50%)
 Frame = +1

Query: 133 IVLTPILKPYLGNIKSCCQHYTFIISYYYTCFYGTVGLFISVHHLKTHLGEQPMASTENI 312
           +++T ++   + N++      T + +       GT G+ +     +TH G  P+ + E++
Sbjct: 309 VIITRVVDSMIDNLRPTRAEATDVAN---AVLDGTDGILLGA---ETHRGPYPVDAAESV 362

Query: 313 YNFMIIHDLKII 348
           YN  ++H  K++
Sbjct: 363 YN-QLVHFKKLV 373


>01_06_0129 -
           26770543-26770720,26774592-26774719,26774829-26774933,
           26775661-26775788,26777332-26777433,26778760-26778861,
           26779777-26779852,26779971-26780059,26780177-26780230,
           26780482-26780614,26780671-26780797,26781590-26781648
          Length = 426

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 190 HYTFIISYYYTCFYGTVGLFISVHHLKTHLGEQPMASTENIYN 318
           ++TF+    ++CF+      I  H+L  +  E+P+ S +  +N
Sbjct: 18  YFTFVSVEPFSCFHLLAFYDIHNHNLLDYSTEKPLTSVKTFFN 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,724,932
Number of Sequences: 37544
Number of extensions: 141486
Number of successful extensions: 233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)