Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h10
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.18 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.75 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   1.3  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   3.0  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    20   9.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    20   9.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    20   9.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +1

Query: 256 VHHLKTHLGEQPMASTENIYNFMIIHDLKI-IXTSMGFXQYVCLLIG 393
           V H++TH GE+P         F     LK+   T  G   Y C + G
Sbjct: 192 VIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICG 238



 Score = 21.4 bits (43), Expect = 4.0
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 262 HLKTHLGEQPMASTENIYNFMIIHDLKIIXTS-MGFXQYVCLL 387
           H +TH GE+P        +F   H LK+   +  G   Y C L
Sbjct: 222 HTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTL 264



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 262 HLKTHLGEQPMASTENIYNFMIIHDLKI 345
           H +TH GE+P        +F +  +L +
Sbjct: 110 HYRTHTGEKPYQCEYCSKSFSVKENLSV 137


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 283  EQPMASTENIYNFMIIHDLKIIXTSMG 363
            +QP+     + N   +H LK+I T  G
Sbjct: 1238 QQPIILPSQLLNIKTLHGLKVIPTPAG 1264


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +1

Query: 247 FISVHHLKTHL----GEQPMASTENIYNFMIIHDL-KIIXTSMGFXQYVCLL 387
           F   HHLKTH+    GE+P   +     F+ + +L + +    G   Y C L
Sbjct: 19  FTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYACEL 70



 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 268 KTHLGEQPMASTENIYNFMIIHDLK 342
           +TH GE+P    E    F   H LK
Sbjct: 2   RTHTGEKPFECPECHKRFTRDHHLK 26


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 262 HLKTHLGEQPMA 297
           H++TH GE+P +
Sbjct: 61  HIRTHTGEKPFS 72


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 11/41 (26%), Positives = 14/41 (34%)
 Frame = +1

Query: 223 CFYGTVGLFISVHHLKTHLGEQPMASTENIYNFMIIHDLKI 345
           C Y  V   +   HLK+H            Y     H LK+
Sbjct: 22  CSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKL 62


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 78  NNIMSTGEYINNNLMFLYCLSIK 10
           +++ +   Y NNN   LYC + K
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYK 105


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 78  NNIMSTGEYINNNLMFLYCLSIK 10
           +++ +   Y NNN   LYC + K
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYK 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,393
Number of Sequences: 438
Number of extensions: 1920
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)