Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h09
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83116-10|CAB05564.2|  311|Caenorhabditis elegans Hypothetical p...    26   6.2  
Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical p...    26   6.2  
U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>Z83116-10|CAB05564.2|  311|Caenorhabditis elegans Hypothetical
           protein M01B2.9 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 144 IKIKIV*WCKSVKAICNIII 203
           I + +  +CK++++ICNI+I
Sbjct: 25  IMVMVTFYCKNLRSICNILI 44


>Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical
           protein T26E4.14 protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 144 IKIKIV*WCKSVKAICNIII 203
           I + +  +CK++++ICNI+I
Sbjct: 25  IMVMVTFYCKNLRSICNILI 44


>U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical
           protein B0507.6 protein.
          Length = 857

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 152 YLYISYKTISCFSCRV*MRSDDIFLREYN 66
           Y Y+  + ISCF+    + + D FL +YN
Sbjct: 4   YFYVDAEMISCFNESTEIGNFDEFLTKYN 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,003,573
Number of Sequences: 27780
Number of extensions: 62089
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)