Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13h08
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 53 3e-08
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 47 2e-06
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 41 1e-04
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 40 3e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 40 4e-04
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 38 8e-04
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 37 0.002
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 36 0.006
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 36 0.006
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 34 0.013
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 34 0.013
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 33 0.030
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 32 0.053
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 32 0.070
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 30 0.21
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 28 0.87
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 0.87
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 28 1.1
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 28 1.1
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 27 1.5
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc... 27 1.5
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.5
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 26 4.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 6.1
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 25 8.1
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 25 8.1
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 53.2 bits (122), Expect = 3e-08
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Frame = +3
Query: 156 EDIPLSTRVALGTVAGMTATTILHPLDLAKVRMQV----CDHPGSTLNVIRHVGRCEGYG 323
++IP A G VAG++ L+PLD+ K RMQ+ D+ G T + ++ + + EG
Sbjct: 4 DNIPFPVTFAAGAVAGISEVLTLYPLDVVKTRMQLSVGKSDYNG-TFDCLKKIVKNEGPH 62
Query: 324 SLYTGLSAALLRQATYTSTRLA---VFYFLYDEYRRKYCKAPCLNEKIIMGMYAGLAGAF 494
LY G+ +L +A + + A + L+ + ++ +P L+ I+ G AG F
Sbjct: 63 RLYRGILPPILMEAPKRALKFASNDTYSKLWRKVFKRKDSSPALS--ILTGSCAGFTETF 120
Query: 495 IGNPSEVALVRL 530
+ P E+ +RL
Sbjct: 121 VVVPFELMKIRL 132
Score = 30.7 bits (66), Expect = 0.16
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Frame = +3
Query: 189 GTVAGMTATTILHPLDLAKVRMQVCDHPGSTLN-------VIRHVGRCEGYGSLYTGLSA 347
GT+ G+ T + P D+ K R+Q + + V R EG+ +LY G
Sbjct: 206 GTIGGIFGTFLSTPFDVIKSRIQTVPRIAGQVPKYNWAYPALVTVAREEGFTALYKGFVP 265
Query: 348 ALLRQATYTSTRLAVFYFLYDEYRR 422
+LR L VF + + Y+R
Sbjct: 266 KVLRLGPGGGILLVVFNSVIEFYKR 290
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 47.2 bits (107), Expect = 2e-06
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Frame = +3
Query: 171 STRVALGTVAGMTATTILHPLDLAKVRMQVCD--HPGSTLNVIRHVGRCEGYGSLYTGLS 344
S +A A + A +L P++ KVR+Q + +T + EG+G+LY GL+
Sbjct: 121 SIYLAASASAELLADIMLCPMEAIKVRVQTSNPRFANTTREAWSKIVTNEGFGTLYRGLA 180
Query: 345 AALLRQATYTSTRLAVF-------YFLYDEYRRKYCKAPCLNEKIIMGMYAGLAGAFIGN 503
RQ YT + A F Y + + Y KA + G AG+ A I +
Sbjct: 181 PLWFRQIPYTMMKFASFERIVEALYTYIGKPKNMYSKAEKIGISFAGGYMAGVLCAIISH 240
Query: 504 PSEVALVRL 530
P++V + +L
Sbjct: 241 PADVMVSKL 249
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 41.1 bits (92), Expect = 1e-04
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 189 GTVAGMTATTILHPLDLAKVRMQVC--DHPGSTLNVIR-HVGRCEGYGSLYTGLSAALLR 359
G AG +T I+HPLDLAK++MQ S V + ++G SLY GLS +L
Sbjct: 7 GLAAGTASTLIMHPLDLAKIQMQASMNQDSKSLFQVFKSNIGSNGSIRSLYHGLSINVLG 66
Query: 360 QATYTSTRLAVFYF 401
A ++ F
Sbjct: 67 SAASWGAYFCIYDF 80
Score = 29.5 bits (63), Expect = 0.37
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 180 VALGTVAGMTATTILHPLDLAKVRMQVCDHPG-STLNVIRHVGRCEGYGSLYTGLSAALL 356
+ + + + A ++PL + + R+QV P S +N++ R +G Y G LL
Sbjct: 190 IFMSAASKVFAAVNMYPLLVIRTRLQVMRSPHRSIMNLVLQTWRLQGILGFYKGFLPHLL 249
Query: 357 RQATYTSTRLAVF 395
R T V+
Sbjct: 250 RVVPQTCITFLVY 262
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 39.9 bits (89), Expect = 3e-04
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 4/139 (2%)
Frame = +3
Query: 126 EKHDKKIHGFEDIPLSTRVALGTVAGMTATTILHPLDLAKVRMQ----VCDHPGSTLNVI 293
EK DK + + G G+ + P D KVR+Q V + L+ +
Sbjct: 3 EKGDKNLLAILVFSFTKDFLAGVSGGVAQVLVGQPFDCVKVRLQSQSNVSPIYNNALDCV 62
Query: 294 RHVGRCEGYGSLYTGLSAALLRQATYTSTRLAVFYFLYDEYRRKYCKAPCLNEKIIMGMY 473
+ + + EG + Y G LL S + F + + R + + + G
Sbjct: 63 KKISKNEGLAAFYKGTVLPLLGIGFCVSIQFTTFEYCKRFFSRDGTPV-TMPQYYVSGAI 121
Query: 474 AGLAGAFIGNPSEVALVRL 530
+GLA +F+ P E +RL
Sbjct: 122 SGLANSFLVGPVEHVRIRL 140
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 39.5 bits (88), Expect = 4e-04
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Frame = +3
Query: 162 IPLSTRVALGTVAGMTATTILHPLDLAKVRMQ---VCDHPGS---TLNVIRHVGRCEGYG 323
+P +A G ++G T TI+ PL++ + R+Q HP + ++ + EG+
Sbjct: 333 LPNGLVMAFGALSGSTGATIVFPLNVIRTRLQTQGTSAHPATYDGFIDCFYKTTKNEGFR 392
Query: 324 SLYTGLSAALLRQATYTSTRLAVFYFLYDEYRR 422
LY GLS LL+ A +A+ Y +Y+ ++
Sbjct: 393 GLYKGLSPNLLKVA----PSVAISYLVYENCKK 421
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 38.3 bits (85), Expect = 8e-04
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 180 VALGTVAGMTATTILHPLDLAKVRMQVCDHP--GSTLNVIRHVGRCEGYGSLYTGLSAAL 353
V T++ + A+T+ +P ++ + R+Q D P S +IR + R EG+ Y+G++
Sbjct: 290 VLAATLSKIAASTVTYPHEVLRTRLQSLDAPTHNSATLLIRDIWRSEGWRKYYSGMATNF 349
Query: 354 LRQATYTSTRLAVF 395
+R +S F
Sbjct: 350 IRTIPASSVTFLSF 363
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 37.1 bits (82), Expect = 0.002
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Frame = +3
Query: 189 GTVAGMTATTILHPLDLAKVRMQV--CDHPGSTLN------VIRHVGRCEGYGSLYTGLS 344
G AG A +++ PLD K+ Q + G + I+H+ G LY G +
Sbjct: 24 GGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRHGLYKAIKHIYHVYGLHGLYQGHT 83
Query: 345 AALLRQATYTSTRLAVFYFLYDEYRRKYCKAP---CLNEKIIMGMYAGLAGAFIGNPSEV 515
A L R Y + + Y++ RR + P + + G AG F P E+
Sbjct: 84 ATLYRVFPYAGIK----FVAYEQVRRVLIRDPEHETHARRFLSGSLAGTCSVFFTYPLEL 139
Query: 516 ALVRL 530
VRL
Sbjct: 140 IRVRL 144
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 35.5 bits (78), Expect = 0.006
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 27/140 (19%)
Frame = +3
Query: 177 RVALGTVAGMTATTILHPLDLAKVRMQVCDHPGST------------------------- 281
R+ G +AG + +PLD+A+ R+ + + G T
Sbjct: 118 RLLFGAIAGAASCATTYPLDIARTRLSI-ETAGLTSRSLAINNVANNSLKVKPLTLWSTL 176
Query: 282 LNVIRHVGRCEGYGSLYTGLSAALLRQATYTSTRLAVFYFLYDEYRRKYCKAPCLN--EK 455
L +++H G GY +LY GL A LL Y S + +F ++ ++K+ L +K
Sbjct: 177 LYIVQHEG---GYPALYNGLPATLLNVVPYVS----ICFFTFEFCKQKFFSNADLTAFQK 229
Query: 456 IIMGMYAGLAGAFIGNPSEV 515
+ +G + G+ G + P++V
Sbjct: 230 LFLGGFTGIIGQTLTFPADV 249
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = +3
Query: 165 PLSTRVALGTVAGMTATTILHPLDLAKVRMQVCDH-----PGSTLNVIRHVGRCEGYGSL 329
P+ + G +G+ ++++P+D K RMQ+ + G+ +N + + EG SL
Sbjct: 18 PMYAHLLAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGNIVNSVIKISSTEGVYSL 77
Query: 330 YTGLSAALL 356
+ G+S+ ++
Sbjct: 78 WRGISSVIM 86
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 34.3 bits (75), Expect = 0.013
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 180 VALGTVAGMTATTILHPLDLAKVRMQVCDH-PGSTLNVIRHVGRCEGYGSLYTGLSAALL 356
V G ++G TAT I +P D+ K R+Q+ H + L+ + V EG+ G +L
Sbjct: 214 VMSGLISGATATAITNPFDMLKTRVQLEPHIYKNFLHSAKLVYANEGFRGFLDGFFLRVL 273
Query: 357 RQATYTSTRLAVF 395
R++ ++ +V+
Sbjct: 274 RKSISSTITWSVY 286
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 34.3 bits (75), Expect = 0.013
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +3
Query: 195 VAGMTATTILHPLDLAKVRMQVCDHPG------STLNVIRHVGRCEGYGSLYTGLSAALL 356
+AG+ + +P+ L K R+Q+ G S+++ I R EG+ LY GLSA+LL
Sbjct: 171 IAGVITSAATNPIWLVKTRLQLDKKSGQAAQYRSSIDCIIKTIRLEGFRGLYKGLSASLL 230
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 165 PLSTRVALGTVAGMTATTILHPLDLAKVRMQ 257
PLS +A G VAGM PLD+ K R+Q
Sbjct: 48 PLSHFIA-GGVAGMLGAIATAPLDVVKTRLQ 77
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 33.1 bits (72), Expect = 0.030
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 99 TKKQKEAKMEKHDKKIHGFEDIPLSTRVALGTVAGMTATTILHPLDLAKVRM 254
T + + + + +HG ++ STR + G+ A+T LHP+D AK R+
Sbjct: 824 TPQITKTSLNREKPALHGSINLKHSTRPVVPIADGIYASTTLHPIDNAKNRL 875
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.053
Identities = 32/127 (25%), Positives = 53/127 (41%)
Frame = +3
Query: 132 HDKKIHGFEDIPLSTRVALGTVAGMTATTILHPLDLAKVRMQVCDHPGSTLNVIRHVGRC 311
H++ P ST A V+ + I +PLD KVR Q + P + + ++ +
Sbjct: 6 HNQPHKAHSGSPASTFSA-ALVSSAISNVIGYPLDSIKVRQQTYNFP-TIRSCFQNAVKN 63
Query: 312 EGYGSLYTGLSAALLRQATYTSTRLAVFYFLYDEYRRKYCKAPCLNEKIIMGMYAGLAGA 491
EG LY GL+ L+ AT + +V + +YD + + I G+ G +
Sbjct: 64 EGLKGLYRGLTLPLI-SATLSR---SVSFTVYDSLKLTFAHVDPTLRYFISGLGTGTFIS 119
Query: 492 FIGNPSE 512
P E
Sbjct: 120 LFACPFE 126
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 31.9 bits (69), Expect = 0.070
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +3
Query: 189 GTVAGMTATTILHPLDLAKVRMQVCDHPGSTLNVIRHVGRCEGYGSLYTGLSAALLRQAT 368
G++AG A + P D+ K R+ S + I+ + EG+ +LY G+ +L
Sbjct: 265 GSIAGGIAAALTTPFDVVKTRIMTSQQRLSYVFTIKSIVAHEGFLALYKGIVPRVL---- 320
Query: 369 YTSTRLAVFYFLYD 410
+ S A+F YD
Sbjct: 321 WLSGGGAIFLGCYD 334
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 30.3 bits (65), Expect = 0.21
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 120 KMEKHDKKIHGFEDIPLSTRVALGTVAGMTATTILHPLDLAKVRMQ 257
K+ + +K G +DI + + G++AG A + PLD+AK R+Q
Sbjct: 198 KLRQVAQKECGQKDIGVFRELITGSLAGAGAGFLTTPLDVAKTRLQ 243
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 28.3 bits (60), Expect = 0.87
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 538 SAISRTSATSEGFPINAPASPAYMPIIIFSFRHGALQYFLLYS 410
S I S T G +N + P Y+ IF+F QY +YS
Sbjct: 58 SVICAFSITGSGLEVNTMSIPFYLIFGIFAFVSFTTQYLGIYS 100
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 0.87
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 213 WPSYLQLYPRRLWCLEG 163
W +L LYP+R+W L G
Sbjct: 3404 WSGFLNLYPKRMWNLVG 3420
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3
Query: 183 ALGTVAGMTATTILHPLDLAKVRMQV 260
ALGTV ATTI PLD+ K R QV
Sbjct: 181 ALGTVV---ATTISTPLDIVKTRYQV 203
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +3
Query: 189 GTVAGMTATTILHPLDLAKVRMQVCDHPGSTLNVIRHVGRCEGYGSLYTGLSAALLRQAT 368
G ++ + ++ P D+ K+RMQ+ S V + + EG +L+ G A L
Sbjct: 23 GGISSVICRFMIAPFDVIKIRMQITQ--SSLRPVFKETVQKEGVRALWRGNVVAELLYLV 80
Query: 369 YTSTRLAVF 395
Y + F
Sbjct: 81 YGAAEFVAF 89
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 27.5 bits (58), Expect = 1.5
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +3
Query: 279 TLNVIRHVGRCEGYGSLYTGLSAALLRQATYTSTRLAVFYFLYDEYR----RKYCKAPCL 446
T V + + +G + G++A LRQ T +RLA+ FL R R +
Sbjct: 146 TFRVFADLYKEKGIRGINRGVNAVALRQMTNWGSRLALSRFLEKPIRYFTGRTEAEPLTT 205
Query: 447 NEKIIMGMYAGLAGAFIGNPSEVALVRLMA 536
++ + + AG + P EVA V + +
Sbjct: 206 GQRFVASVSAGALSCW-NQPLEVARVEMQS 234
>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 39 LNSQLTKPYPLSIKCKVEIQTKKQKEAKM 125
L +++ KPY +SI CK+ + K+ K+
Sbjct: 144 LVNEIGKPYKISISCKIRLLETKEDTLKL 172
>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 133 CFSILASFCFFVCISTLHFIDKGYGFVNCEFRSCPFLFLV 14
C + S C + ++ I++GY F+ C R C F++++
Sbjct: 2 CTFVFESLCAMISTLKVNKIERGYWFIQC-LRYC-FIYII 39
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 156 EDIPLSTRVALGTVAGMTATTILHPLDLAKVRMQ 257
E + T +G+VAG+ P+D K RMQ
Sbjct: 199 EKLSTVTTFLVGSVAGIITVYCTQPIDTVKSRMQ 232
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 165 PLSTRVALGTVAGMTATTILHPLDLAKVRMQV 260
P+ + +A G VAG +I +P + AK R+Q+
Sbjct: 17 PVKSIIA-GGVAGAIEISITYPAEFAKTRLQL 47
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +3
Query: 315 GYGSLYTGLSAALLRQATYTSTRLAVFYFLYDEYRRKYCKAPCLN--EKIIMGMYAGLAG 488
G LY GL+A + RQA + R + + + + L+ ++G AG+
Sbjct: 158 GIRGLYRGLAATVARQAANSGVRFTAYNSIKQSLQSRLPPDEKLSTVTTFLVGSVAGIIT 217
Query: 489 AFIGNPSEVALVRLMA 536
+ P + R+ +
Sbjct: 218 VYCTQPIDTVKSRMQS 233
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 248 PNAGLRPPWLDFERNPTRGQVRRL 319
PN GL P L+F +N + GQ++RL
Sbjct: 1222 PN-GLDTPLLEFSKNFSGGQIQRL 1244
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 84 KVEIQTKKQKEAKMEKHDKK 143
K E Q KK+K+ K +K DKK
Sbjct: 245 KKEKQNKKEKKDKKDKKDKK 264
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 21 NKNGQLLNSQLTKPYPLSIKCKVEIQTKKQKEAKMEKHDKKIHGFEDIPLSTR 179
N+ LL+S+ +PL ++C + + K + K +KK++ D LS++
Sbjct: 126 NRIFDLLSSKTKVDHPLCVECAELLTEEMSKTLRALKEEKKMYFNYDNFLSSQ 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,947
Number of Sequences: 5004
Number of extensions: 47016
Number of successful extensions: 214
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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