Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h06
         (198 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.037
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   1.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    19   4.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    19   5.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    19   7.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           18   9.9  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         18   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             18   9.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 26.2 bits (55), Expect = 0.037
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = +1

Query: 4   EAL-NPIKQDVKKGNLRFVNNVFPHR-----GY-IWNYGALPQT-WENPN 129
           EAL N IK    KGN+R    +FP R      Y +WN+  +    ++NP+
Sbjct: 151 EALCNHIKYSTNKGNIRSAITIFPQRTDGKHDYRVWNHQLISYAGYKNPD 200


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 97  GALPQTWENPNHVDPDTGARGDNDPVDVIE 186
           GA+    E    VD D    GD+D  D +E
Sbjct: 377 GAMNANGEAVGEVDEDDDDDGDDDDDDDVE 406


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 97  RNSRCSRDEGR 65
           R  RCSRD  R
Sbjct: 233 RERRCSRDRNR 243


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = -1

Query: 63  VVHEPKVAFLYVLLDRI 13
           V+H+P++  + +  D+I
Sbjct: 139 VIHQPRIIIIDLKTDKI 155


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 106 PQTWENPNHVDPD 144
           P  + NP+  DPD
Sbjct: 451 PHIYPNPDVFDPD 463


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 100 ALPQTWENPNHVDPDT 147
           A+  T  +PN+V PD+
Sbjct: 529 AVKDTXCDPNYVVPDS 544


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +1

Query: 130 HVDPDTGARGDNDPV 174
           +++PDT     N+P+
Sbjct: 40  NIEPDTELMDSNEPL 54


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +3

Query: 9    PQSYQAGRKERQPSVREQR 65
            PQ  Q  ++++QP  + Q+
Sbjct: 1505 PQQQQQQQQQQQPQQQSQQ 1523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.141    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,422
Number of Sequences: 438
Number of extensions: 702
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.7 bits)