Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h05
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    33   0.037
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   3.2  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    26   3.2  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    26   4.2  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    25   5.6  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   5.6  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 32.7 bits (71), Expect = 0.037
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
 Frame = +2

Query: 296 YITLHSYGEVIMFPFAFKDDLC-PDYIRLLEGATAMSRGIYDFNGNTY---KVGISKDVM 463
           ++ +HSY + +++P+A+  DL  PD     E A  + + ++  N   Y   +  I  D  
Sbjct: 373 FLDVHSYSQSVLWPYAYTCDLFPPDTENFEELAIGLVKELHRVNSRYYTYQQACIPYDGF 432

Query: 464 YG--AAGTSNDWSYGELGIPYCYLIXLR 541
           +     GT+ DW Y    + + + I LR
Sbjct: 433 HKHYLPGTAIDWVYFAADVAWPFNIRLR 460


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 345 KANGNMITSP*LCNVM*TLNVIPEFNMKSSCTHVKQSYPGLQITIFL 205
           K++ NMI    +CN    L + P+   K+  + V   YP LQ  I +
Sbjct: 213 KSSANMIRHLTVCNDFLQLGLNPKLQAKNQQSSVHLKYPYLQQCIVI 259


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 320 EVIMFPFAFKDDLCPDYIRLLEGATAMSR 406
           E I  PF FK  + PD +R +  A A ++
Sbjct: 20  ETIALPFVFKAPIRPDLVRSVHTAVAKNK 48


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -1

Query: 448 NSNFIRVSIEVIYTPRHSSCSFEQTDVVWAKIIFESKWKHDYLSITMQCDV 296
           N+ F+ +S+ VI      +  F +T  VW+ I   + W   +  +   C V
Sbjct: 220 NTLFLFISMIVILAMSSKNHGFNETSKVWSHIENYTDWPDGFAILMSFCGV 270


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 320 EVIMFPFAFKDDLCPDYIRLLEGATAMSR 406
           E +  PF FK  + PD +R +  A A ++
Sbjct: 20  ETLALPFVFKAPIRPDLVRSVHTAVAKNK 48


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 445 SNFIRVSIEVIYTPRHSSCSFEQTDVVWAKIIFESKWKHDYLSITMQC 302
           SNF  V++ VI  P++   ++ +       I+FE  +  DYL  ++ C
Sbjct: 202 SNF--VNLIVIREPKYQKFAYGKAVGKLKNIVFEHGYSSDYLYYSVPC 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,475
Number of Sequences: 5004
Number of extensions: 48749
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)