Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h05
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0134 + 26161904-26162776                                         31   0.80 
06_01_1034 + 8110347-8110943,8111201-8111512,8111841-8112011,811...    29   2.4  
01_01_0978 + 7738232-7740848,7740929-7741320                           29   3.2  
10_02_0135 + 5674786-5675040,5675179-5675490,5676505-5677010,567...    28   4.3  
03_01_0150 + 1191410-1191697,1191818-1191941,1192063-1192121,119...    28   5.6  
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352...    27   7.5  
06_01_0085 - 678144-678335,678466-678639,678721-678912,679756-67...    27   7.5  

>02_05_0134 + 26161904-26162776
          Length = 290

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 334 KHDYLSITMQCDVNFKRNTRI*HEILVYTCQAKLSRPSNHNFLTVYTC 191
           +HDY ++  Q D    R   +  E L    Q +   P+NH    ++TC
Sbjct: 123 EHDYAALRAQYDALHARVESLRQEKLALADQVRAPLPTNHQLYLLHTC 170


>06_01_1034 +
           8110347-8110943,8111201-8111512,8111841-8112011,
           8112780-8114576
          Length = 958

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 422 NGNTYKVGISKDVMYGAAGTSNDWSYGELG 511
           N N +  G   D+ + A+   +DW YG +G
Sbjct: 14  NANVFMPGGPNDISFPASNRDHDWGYGGVG 43


>01_01_0978 + 7738232-7740848,7740929-7741320
          Length = 1002

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 242 LTCVHEDFMLNSGITFKVYITLHSYGEVI 328
           L C+ ED ++ SG + KVY  + S GEV+
Sbjct: 687 LDCLDEDNVIGSGASGKVYKAVLSNGEVV 715


>10_02_0135 +
           5674786-5675040,5675179-5675490,5676505-5677010,
           5677057-5677103,5677457-5677918,5678071-5678294
          Length = 601

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 268 HEIL--VYTCQAKLSRPSNHNFLTVYTCVGTSYSF 170
           H +L  VY   A +++P+N NF  V+ CV    +F
Sbjct: 546 HRVLNAVYAMAADINKPANPNFRRVHNCVMQDANF 580


>03_01_0150 +
           1191410-1191697,1191818-1191941,1192063-1192121,
           1192565-1192629,1192838-1192931,1193005-1193085,
           1193176-1193287,1193949-1194036,1194440-1194561,
           1194636-1194973,1195579-1195870,1195946-1196016,
           1197741-1197849,1198760-1198803,1198804-1198847,
           1200431-1200524
          Length = 674

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 287 FKVYITLHSYGEVIMFPFAFKDDLCPDYIRLLEG 388
           FK+   +H    V  FP   KDDL PD+I L  G
Sbjct: 236 FKLRQNIHESNGV-KFPKEIKDDLHPDFIDLCRG 268


>11_01_0456 +
           3522599-3523921,3524005-3524027,3524097-3525265,
           3525373-3525737
          Length = 959

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 354 IFAQTTSVCSKEQLLCRGVYMTSMETRIKLEFQKTLCME 470
           +F     VCS  Q++C  +Y    +    LEF+K + ++
Sbjct: 8   LFQLLLMVCSAVQIICSSLYGNETDKLSLLEFKKAITLD 46


>06_01_0085 -
           678144-678335,678466-678639,678721-678912,679756-679911,
           680091-680158,680878-681127
          Length = 343

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 446 ISKDVMYGAAGTSND-WSYGELGIP 517
           +S  V YG AG+SND  S+G++ +P
Sbjct: 122 VSGIVHYGTAGSSNDSMSFGDVSVP 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,476
Number of Sequences: 37544
Number of extensions: 272667
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)