Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h03
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    30   0.26 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   4.3  
SPBC800.12c |||ubiquitin family protein, unknown|Schizosaccharom...    25   7.5  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.9  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    25   9.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.9  
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    25   9.9  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   9.9  

>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 25/90 (27%), Positives = 38/90 (42%)
 Frame = +2

Query: 143 DDIYGYLEEFSKRKPKSIPQELNEYLAYVARTGDPVYQWPLVKSLFKEKLLNVITDFYDT 322
           +D Y  +E+F K  PK+ P+E+ EY   V ++     +W L   L    L   + D    
Sbjct: 127 NDHYISIEQFCKNMPKTTPEEVLEYEFNVCQS----LKWDLYVWLPFRPLQGFLLDCQTV 182

Query: 323 TPNTDIPPYPNVDPFNYDTMKNSLIERLES 412
            P   +  +       +D  K  LIE L S
Sbjct: 183 LPKVAVEKFYEC----HDLSKKFLIETLHS 208


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 188  KSIPQELNEYLAYVARTGDPVYQWPLVKSLFKEKLLNVITDFYDTTPNTDIPPYPNV 358
            K + ++ NE + Y   + D  +   ++  L K  L N+ T+  DT+ +      PNV
Sbjct: 1115 KHLKEQFNEGVDYDLLSSDEEFDVHVIAGLLKLYLRNLPTNLLDTSMHKLFELLPNV 1171


>SPBC800.12c |||ubiquitin family protein,
           unknown|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 131 MENADDIYGYLEEFSK---RKPKSIPQELNEYLAYVARTGDPVYQWPLVKSLFKEKLLNV 301
           M     +  +LEE SK     P SIP E  +  A       P+ ++    +LF+EK ++V
Sbjct: 1   MSEVQIVKSFLEELSKTPRNHPDSIPIEKIDETAISITIPAPLVEFQGNLALFEEKKVHV 60

Query: 302 I 304
           +
Sbjct: 61  V 61


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/89 (22%), Positives = 35/89 (39%)
 Frame = +2

Query: 368 NYDTMKNSLIERLESFTSAPFTVQRICELLTYPRKQYNRVDKFMRAIEKNILVVSTREPG 547
           +Y T  N+L+ER          VQ+I           N  +  +  +  N++        
Sbjct: 541 SYGTEINNLLERRNELLDDYNNVQKILNESLEASVHLNTKNLELADLNNNLV------KQ 594

Query: 548 IVRQPEPENGDNAEHLVNGSDNNSEYNVD 634
           I  +  PEN  N EH +  S  N+  +++
Sbjct: 595 IQHRVPPENQSNLEHTITTSSKNTTSSIN 623


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 81  LGFNISYSFSIDFQTETWKMLMIYMVIWKNF 173
           LG   SYS + DFQ+   KM   + + ++ F
Sbjct: 127 LGTGYSYSLAKDFQSNNEKMANDFSIFFEKF 157


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 560 PEPENGDNAEHLVNGSDNNSEYNVDVEMED 649
           PE E  + +  + N    NS+YN  ++MED
Sbjct: 191 PEVEKIETSTSVENAYITNSQYNDTLDMED 220


>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 450 SQILCTVNGADVKDSKRSIKLFFIVS 373
           S++L   N   +KD  R++KLFF+ S
Sbjct: 442 SEVLKYRNQVQLKDKARNMKLFFLKS 467


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 524 VVSTREPGIVRQPEPENGDNAEHLVNGSDNNSEY 625
           +++  +  ++R+P+  NG  A++  N SD   EY
Sbjct: 201 LITFNKISVIRRPDTLNGIGAQNPNNKSDYEKEY 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,589
Number of Sequences: 5004
Number of extensions: 63341
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)