Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13h03
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0063 + 11052916-11053106,11054865-11054945,11055314-110553... 57 1e-08
07_03_0153 - 14481421-14481506,14481933-14482111,14483046-144831... 30 1.5
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 29 2.6
01_06_1344 + 36474144-36474296,36474786-36474858,36475309-364754... 29 4.5
04_04_1194 - 31643422-31643511,31643695-31643805,31643892-316444... 28 5.9
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 28 7.8
01_04_0011 + 15067536-15068236,15068283-15068898 28 7.8
>06_02_0063 +
11052916-11053106,11054865-11054945,11055314-11055362,
11055468-11055576,11056356-11056408,11056555-11056617,
11057398-11057745
Length = 297
Score = 56.8 bits (131), Expect = 1e-08
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Frame = +2
Query: 197 PQELNEYLAYVARTGDPVYQWPLVKSLFKEKLLNVITDFYD--TTPNTDIPPYPNVDPFN 370
P+E+ + +A TG + W +K L +L V+ ++ + D +
Sbjct: 74 PEEMRSVIEIIADTGKFWHDWSFLKRLLSLQLKQVLAEYSEGQVVSQEDGQLQNSFSGET 133
Query: 371 YDTMKNSLIERLESFTSAP-FTVQRICELLTYPRKQYNRVDKFMRAIEKNILVVST 535
Y + L + L F P FT+QR+CE+L P+ Y ++ K A+EKN+LV ST
Sbjct: 134 YSELVIWLNDALLRFEEGPPFTLQRLCEILLDPKGTYTKLPKLALALEKNLLVTST 189
>07_03_0153 -
14481421-14481506,14481933-14482111,14483046-14483130,
14483301-14483499,14484222-14484292,14484380-14484486,
14484571-14484703,14484870-14485020,14485147-14485249,
14485330-14485438,14485587-14485746,14486293-14486394,
14486892-14487009,14487596-14487750,14487850-14487948,
14488078-14488167
Length = 648
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 323 TPNTDIPPYPN-VDPFNYDTMKNSLI---ERLESFTSAPFTVQRICELLTYPRKQYNRVD 490
TP+T++ PYP+ VD F YD + L E F + + +++ +L+ RK + + D
Sbjct: 145 TPHTNVDPYPDYVDWFEYDGKGHPLSSAPEPKRRFVPSRWEQKKVVKLVRAIRKGWIKFD 204
Query: 491 K 493
K
Sbjct: 205 K 205
>07_03_0572 - 19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 467 RKQYNRVDKFMRAIEKNILVVSTREPGIVRQPE--PENGDNAEHLVNGSDNNSEYNVDVE 640
R+++++ + F + ++ + GIV E PENG + NG +NNS ++D
Sbjct: 799 RRRHSKKNGFSYRSQAQNVIRKSNSNGIVENNEHDPENGYAEQFSKNGVENNSHPDIDEN 858
Query: 641 MEDVSWKEAT 670
+ E T
Sbjct: 859 NNQLGIDEHT 868
>01_06_1344 +
36474144-36474296,36474786-36474858,36475309-36475481,
36475613-36475667,36475750-36475766
Length = 156
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -1
Query: 414 KDSKRSIKLFFIVS*LKGSTLGYGGISVFGVVS*KSVMTFNNFSLNK----LFTRGHWYT 247
KD+K+S + + + GS++ YGG +G+ K N++ +K + G W+
Sbjct: 92 KDNKQSNQYDSVDTSCFGSSVNYGGRDYYGISGHKQSTESNDYKADKKDPSTDSHGDWWQ 151
Query: 246 GS 241
GS
Sbjct: 152 GS 153
>04_04_1194 -
31643422-31643511,31643695-31643805,31643892-31644406,
31644456-31644756
Length = 338
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 544 RNCASARTRKWRQCGTSR 597
R C S TR WR+CG +
Sbjct: 115 RRCGSGATRSWRRCGKDK 132
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/96 (23%), Positives = 42/96 (43%)
Frame = +2
Query: 362 PFNYDTMKNSLIERLESFTSAPFTVQRICELLTYPRKQYNRVDKFMRAIEKNILVVSTRE 541
P NY +K +E+ + + F + + T+P+ +Y R + K + + R+
Sbjct: 317 PQNYQVVK---VEQPKMDSLVKFMQNFLEKETTWPKNRYYRPSVKPPILAKKLEQSAQRK 373
Query: 542 PGIVRQPEPENGDNAEHLVNGSDNNSEYNVDVEMED 649
P +P +G ++ H S +S DV MED
Sbjct: 374 PLSAPKPTKGSGSSSSHHDESSPRSS---ADVSMED 406
>01_04_0011 + 15067536-15068236,15068283-15068898
Length = 438
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 346 WRNICIWSSVVKVCDDV*QF 287
W+ IWSS+ +CDD+ F
Sbjct: 365 WKKELIWSSISDMCDDIENF 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,866,342
Number of Sequences: 37544
Number of extensions: 345581
Number of successful extensions: 979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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