Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h01
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0338 - 21121289-21121350,21121456-21121528,21121808-211218...    40   0.001
12_02_0022 - 12398938-12401015,12401119-12401182                       28   6.1  

>01_05_0338 -
           21121289-21121350,21121456-21121528,21121808-21121892,
           21122031-21122122,21122479-21122607,21123253-21123310,
           21123448-21123517,21123643-21123676,21123850-21123917,
           21124057-21124261
          Length = 291

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
 Frame = +3

Query: 210 EVQALEAILL---KDVVVKRVG-DVPKYIIETIIHPLTGDNIDQQYVCVTLEV--GLSSG 371
           EV+AL+AIL+   K++     G        + ++ P   D  +  YV V L +    +  
Sbjct: 55  EVEALQAILMDDIKEIDPSESGLSTTARCFQIVLSPQDDDFDESAYVPVQLALIFAHTEK 114

Query: 372 YPDTSPEVALKNPRGLDDMILDTINTHIQDKLKNNLGQPIVFELIGVSQ 518
           YPD  P + +K+ RG+    L ++   ++ +   NLG  +V+ L+  +Q
Sbjct: 115 YPDEPPLLNVKSVRGMKSEDLASLKEKLEQEATENLGMAMVYTLVTSAQ 163


>12_02_0022 - 12398938-12401015,12401119-12401182
          Length = 713

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 408 PRGLDDMILDTINTHIQDKLKNNLG 482
           P+GL DM+++ I   I+D+  N LG
Sbjct: 475 PKGLKDMVIEYIKFMIKDRTVNTLG 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,659,322
Number of Sequences: 37544
Number of extensions: 316026
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)