Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13h01
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.3  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 476 FGTTNSV*TYWSKSMNNYKK*LYNRVALINV 568
           +   N+   Y + + NNY K LY +  +IN+
Sbjct: 324 YSNYNNYNNYNNNNYNNYNKKLYYKNYIINI 354


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 413 RSR*YDFRHYQHTYSRQ 463
           RSR +DF+H    YSR+
Sbjct: 218 RSRTHDFQHTSSRYSRE 234


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 413 RSR*YDFRHYQHTYSRQ 463
           R+R +DF+H    YSR+
Sbjct: 218 RNRTHDFQHTSSRYSRE 234


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 488 NSV*TYWSKSMNNYKK*LYNRVALINVRI 574
           N+   Y + + NNYKK  YN + +  + +
Sbjct: 336 NNYNNYNNNNYNNYKKLYYNIINIEQIPV 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,573
Number of Sequences: 438
Number of extensions: 3713
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)