Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13g22
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    28   1.3  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   3.0  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   5.2  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   5.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.9  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.9  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    25   9.1  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 332  NWFYFIKFVTNWLL*KNFTNSLVSMVMSA 246
            N+FY IK   N LL    T+  +SM+MSA
Sbjct: 1156 NYFYNIKLAKNMLLNTEDTSFKISMMMSA 1184


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 391 SITSYLXSSSQVLQHFPCFLTGFILLNSLQIGCYEKILQTV 269
           ++ + L      L HF  FL   I+L +L+I  YEK   T+
Sbjct: 296 TLHNLLADGDFTLFHFTLFLLSKIILLNLKISDYEKAFSTL 336


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = -1

Query: 422 FICYLCYCSPFHYLISLVFQPSFTTFSMFFNWFYFI-KF----VTNWLL 291
           F+C   Y   FHYL  +V+      F +   W Y + K     VT WLL
Sbjct: 519 FVCSSRYLLDFHYLTQVVY-GYMIGFGVGLFWVYLVGKLRSLGVTKWLL 566


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 417 NKDNRKDEVEVREGVKGRNGVNEVREGDFRGNNSNGVNEVRE 542
           NKDN ++ +   +  K    +NE+++    G   N +NEV+E
Sbjct: 828 NKDNFQNMINFDKRTKVTRILNEIKKFQSVGYMFNPINEVQE 869


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -2

Query: 205  SGLGP*PVGRLNLRIGFFRLMRGYLKTQLLHYNYIADSFNTFTPLYNFYL 56
            +G+G   +G L  +  F+R+++   +T   H   +   F T   L + YL
Sbjct: 3811 AGIGKLDIGLLMEKPTFYRILQLLCETSANHSTSLKHEFGTLNTLLSKYL 3860


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 422 FICYLCYCSPFHYLISLVFQPSFTTFSMFFNWFY--FIKFVTNWLL*KNFTNSLVSMVMS 249
           ++ Y CYC+ F  L  ++F   F         F   F++++  +L  K   NSL+ M   
Sbjct: 52  YLIYFCYCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYL--KGSINSLLYMASF 109

Query: 248 AFLISKL 228
              IS L
Sbjct: 110 TKQISLL 116


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -2

Query: 388 ITSYLXSSSQVLQHFPCFLTGFILLNSLQIGCYEKILQTVW 266
           + S+    SQ++  +P     F++ + ++    E+ LQT+W
Sbjct: 37  LLSWFMKESQIMFGWPNQFIAFVVDHRIRKNSTEEALQTIW 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,238
Number of Sequences: 5004
Number of extensions: 40075
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)