Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13g16
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    42   1e-04
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    29   0.65 
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    27   2.0  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   4.6  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   6.0  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   8.0  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   8.0  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +1

Query: 622 NFSDLPIWNFDGSSTNQADGHNSDTYL 702
           +   L +WNFDGSST QA G+NSDT L
Sbjct: 54  SIDQLRVWNFDGSSTGQAPGNNSDTLL 80



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = +1

Query: 295 VLSKT-LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKA 435
           +LSK  +L++Y DLP    K++A YIWIDG   HLR K  TL+  P +
Sbjct: 9   LLSKAAILNKYADLPQNG-KVMAEYIWIDGF-NHLRSKTMTLDAKPSS 54


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 417 QGAIFAPQVFARAVDPNVGGENLVSRQWKIIVSTQ 313
           Q  IF     AR    +VGG +  SR WKI+  +Q
Sbjct: 292 QDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQ 326


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = +1

Query: 418 NFIPKAPKDKLSRILEDYNARA--KSNAREWKLKNEVHFLIHYY--PKDQEGPSGYESNC 585
           +F+ +AP DKL   L  +   +    +A+   L+   HFL      P+      GYES  
Sbjct: 9   DFLSQAPIDKLKATLSGHLPVSCITMDAKITSLQPGYHFLFFSLASPESNLNSDGYESLY 68

Query: 586 SPKNERKNSF 615
           SPK     SF
Sbjct: 69  SPKPNNPFSF 78


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 223 GLPFLLFAYQIYCYWLSASRV*LISTPTIFNSTDILLRACLINVSTK 83
           GL F  F+Y++       S V LIS PT+     ILL  C++ ++ K
Sbjct: 133 GLCFATFSYEVSPVVSVLSGVLLISLPTL-----ILLNLCILKLAAK 174


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +1

Query: 430 KAPKDKLSRILEDYNARAKSNAREWKLKNEVHFLIHYYPKDQEGPSGYESN 582
           +A + +L  + +  N +  S  +    K++ +++ HY PK+    +GY  N
Sbjct: 636 EASESELEEVFK--NPKELSKKKTTDFKDKEYYMSHYAPKESIQETGYAIN 684


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = +1

Query: 439 KDKLSRILEDYNARAKSNAREWKLKNEVHFLIHYYPKDQEGPSGYESNCSPKNERKNSFD 618
           K ++S +   + A+ +   R  +L + V   +      +  PS Y+S      E K SF+
Sbjct: 195 KKRISALFRVFLAKQEEKKRAKRLNDAVP--LEDMAGSESRPS-YDSIFRESFEAKRSFE 251

Query: 619 ENFSDLPIWNFDGSST 666
           ++   +P+   DG++T
Sbjct: 252 DSKGKVPLSALDGTAT 267


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 130 STDILLRACLINVSTKTKSDSYCGHRG 50
           S D+ LR    N  T T + +Y GHRG
Sbjct: 255 SEDLTLRLWTWNDKTLTNTYTYTGHRG 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,306
Number of Sequences: 5004
Number of extensions: 61368
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)