Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13g12
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 297 GQIFLNDILVEKIHTGKGLMLLRP*LEGRALSIGIAIM*SL--LFSLI*QFNLKPAFK 130
           G I  ND     I++ KGL +L   +EG A S       S+  L   I  +NL+ A K
Sbjct: 341 GYILNNDGKWHNIYSEKGLNILGNIIEGNADSYNTEFYGSIDTLARKILGYNLEAASK 398


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 297 GQIFLNDILVEKIHTGKGLMLLRP*LEGRALSIGIAIM*SL--LFSLI*QFNLKPAFK 130
           G I  ND     I++ KGL +L   +EG A S       S+  L   I  +NL+ A K
Sbjct: 341 GYILNNDGKWHNIYSEKGLNILGNIIEGNADSYNTEFYGSIDTLARKILGYNLEAASK 398


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +2

Query: 593 DDWECIDVCRCSVKLRSAC 649
           D W  +D+  C+  + S C
Sbjct: 112 DSWVSLDILLCTASILSLC 130


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 665 AVPSNSRRSEV*RYIGKRRYTPSHHGEYVPPEV 567
           ++  NS RSE   Y G+R  T     E +P  +
Sbjct: 33  SISRNSNRSESSGYCGRRPSTFGSSNEALPQPI 65


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 665 AVPSNSRRSEV*RYIGKRRYTPSHHGEYVPPEV 567
           ++  NS RSE   Y G+R  T     E +P  +
Sbjct: 33  SISRNSNRSESSGYCGRRPSTFGSSNEALPQPI 65


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 NDHIIAIPMDRALPSNH 226
           N+  +A+P    LP NH
Sbjct: 349 NEKTLAVPAPPVLPENH 365


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 NDHIIAIPMDRALPSNH 226
           N+  +A+P    LP NH
Sbjct: 349 NEKTLAVPAPPVLPENH 365


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 NDHIIAIPMDRALPSNH 226
           N+  +A+P    LP NH
Sbjct: 349 NEKTLAVPAPPVLPENH 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,094
Number of Sequences: 438
Number of extensions: 4292
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)