Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13g07
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    28   1.1  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   2.0  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         27   3.4  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   4.5  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.0  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   7.9  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    25   7.9  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 534 YKVDDVIGEKDSQSYNYIKKFVE 602
           Y VD V+ + ++Q+Y ++KKF E
Sbjct: 67  YPVDGVVPKHETQAYEFLKKFPE 89


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 130 TIXPIVKQSETTADMFTG**TFLFQLNNVWLYF 32
           TI P  K  +  A   T   +F+F L ++WLYF
Sbjct: 475 TITPATKSDKGWAGFLTFAFSFVFLLFSIWLYF 507


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 185 SSNKNVDSEMPIVQRQSETARR 250
           S++K  D+E+P+V+ + E AR+
Sbjct: 518 SASKTTDTEIPLVKNEDENARK 539


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +3

Query: 183 DPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVR 362
           +P T + +  C+  SG+    +   + L L ++   +  VST   P  SLN  R N+ V+
Sbjct: 513 EPVTSVALGDCEVVSGS----EDGKIYLWLFNNAPNESPVSTQSVPISSLNGQRSNSSVQ 568

Query: 363 NSIENKRRLVSALS 404
            ++ +     S+LS
Sbjct: 569 RALSSVPNYSSSLS 582


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -1

Query: 460  SITLAIAMNSLCPSGSRHADNADTNLRLFSIEFLTLVFNLCKFNDWGGSGTVDTSF 293
            SI    + +++    S+ ADN++TNL  F+     +   L  F+  G  G+ D  +
Sbjct: 856  SINSGASADAVSSGISKKADNSETNLNYFATLDAFVKSPLMSFDGLGELGSTDQRY 911


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 188 SNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIHGTRAPPIIELAQIEHK 355
           S+ ++D     V       +++  EP+ +++R NQ+  +   RA  + ELA  E +
Sbjct: 173 SSNDIDDGFQTVTSSRSYGKKKSTEPLTKRQRQNQQKKL---RAKEMQELADEEQR 225


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 508 ILLLYTRMLCPAQDTSSITLAIAMNSLCPSGSRHADNADTNL-RLFSIEFLTLVFNLCKF 332
           +LLL  RM    +  ++++L   ++S C  G+   D A   + + F  +   L+FN    
Sbjct: 618 LLLLEKRMESEGKAPTALSLVAFVSSYCKQGAEGLDEAKRYMSKNFQPDKRALLFNPRTA 677

Query: 331 ND 326
           ND
Sbjct: 678 ND 679


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 218 IVQRQSETARRQHREPVPRQRRSNQEGSIHGTRAPPI 328
           + Q Q  +   +   P P   R  QE S++GT++ PI
Sbjct: 394 VSQSQPASPNLRFNMPAPLATRFLQEHSLNGTKSAPI 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,227
Number of Sequences: 5004
Number of extensions: 59057
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)