Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13g07
         (703 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC044587-1|AAH44587.1|  195|Homo sapiens LSM12 homolog (S. cerev...   140   4e-33
AK055218-1|BAB70877.1|  195|Homo sapiens protein ( Homo sapiens ...   140   6e-33
BC105288-1|AAI05289.1|  131|Homo sapiens LSM12 protein protein.        98   2e-20
BC025396-1|AAH25396.1|  538|Homo sapiens spermatogenesis associa...    31   4.0  
AK057468-1|BAB71501.1|  522|Homo sapiens protein ( Homo sapiens ...    31   4.0  
AK127467-1|BAC86992.1|  346|Homo sapiens protein ( Homo sapiens ...    30   9.2  

>BC044587-1|AAH44587.1|  195|Homo sapiens LSM12 homolog (S.
           cerevisiae) protein.
          Length = 195

 Score =  140 bits (339), Expect = 4e-33
 Identities = 71/177 (40%), Positives = 112/177 (63%)
 Frame = +3

Query: 87  MSAVVSDCFTIGXIVATRTCYXENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNL 266
           M+A   + F++G  V+ RTC  + ++GEV+AFD Q+KML LKC SSSG P   D+ ++NL
Sbjct: 1   MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINL 60

Query: 267 SLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 446
             VS+V+I  + +  P P  SLN+ +L ++ R   E K     A+SA +  EGQ+LF  I
Sbjct: 61  QYVSEVEIINDRTETPRPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTI 120

Query: 447 ARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRD 617
            + I D  W  ++I V    + +V+ITPPY+V++  G K+  + ++++K VE+H+RD
Sbjct: 121 HKTIKDCKWQEKNIVV----MEEVVITPPYQVENCKG-KEGSALSHVRKIVEKHFRD 172


>AK055218-1|BAB70877.1|  195|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30656 fis, clone DFNES2000292. ).
          Length = 195

 Score =  140 bits (338), Expect = 6e-33
 Identities = 71/177 (40%), Positives = 112/177 (63%)
 Frame = +3

Query: 87  MSAVVSDCFTIGXIVATRTCYXENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNL 266
           M+A   + F++G  V+ RTC  + ++GEV+AFD Q+KML LKC SSSG P   D+ ++NL
Sbjct: 1   MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINL 60

Query: 267 SLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 446
             VS+V+I  + +  P P  SLN+ +L ++ R   E K     A+SA +  EGQ+LF  I
Sbjct: 61  QYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTI 120

Query: 447 ARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRD 617
            + I D  W  ++I V    + +V+ITPPY+V++  G K+  + ++++K VE+H+RD
Sbjct: 121 HKTIKDCKWQEKNIVV----MEEVVITPPYQVENCKG-KEGSALSHVRKIVEKHFRD 172


>BC105288-1|AAI05289.1|  131|Homo sapiens LSM12 protein protein.
          Length = 131

 Score = 98.3 bits (234), Expect = 2e-20
 Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
 Frame = +3

Query: 87  MSAVVSDCFTIGXIVATRTCYXENIEGEVLAFDPQTKMLIL---KCQSSSGNPKRHDVNI 257
           M+A   + F++G  V+ RTC  + ++GEV+AFD Q+KML L   +C SSSG P   D+ +
Sbjct: 1   MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALISPECPSSSGKPNHADILL 60

Query: 258 VNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 437
           +NL  VS+V+I  + +  P P  SLN+ +L ++ R   E K     A+SA +  EGQ+LF
Sbjct: 61  INLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLF 120

Query: 438 MAIARVIDD 464
             I + I D
Sbjct: 121 QTIHKTIKD 129


>BC025396-1|AAH25396.1|  538|Homo sapiens spermatogenesis associated
           18 homolog (rat) protein.
          Length = 538

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 185 SSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQ-EGSIHGTRA 319
           S  K+VDS++P +Q   +  R +H++P PR R   Q + +++ TR+
Sbjct: 90  SLGKSVDSKVPSLQDTFD--RERHKDPSPRDRDMQQLDSNLNSTRS 133


>AK057468-1|BAB71501.1|  522|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32906 fis, clone TESTI2005731. ).
          Length = 522

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 185 SSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQ-EGSIHGTRA 319
           S  K+VDS++P +Q   +  R +H++P PR R   Q + +++ TR+
Sbjct: 90  SLGKSVDSKVPSLQDTFD--RERHKDPSPRDRDMQQLDSNLNSTRS 133


>AK127467-1|BAC86992.1|  346|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45559 fis, clone BRTHA3003225. ).
          Length = 346

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 230 QSETARRQHREPVPRQRRSNQEGSIHGTRAPPIIELAQIEHKS*KFY*KQTKIGISI 400
           Q +    QHR  V   RRS +  S+H  R  P  +  Q++    ++  + T   +S+
Sbjct: 110 QQQLLEAQHRRLVSHPRRSQERVSVHPHRLHPSFDFGQLQTPQPRYLAEGTDWDLSV 166


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,416,229
Number of Sequences: 237096
Number of extensions: 2182047
Number of successful extensions: 4556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4551
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)