Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13g07
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73428-5|CAA97808.2|  209|Caenorhabditis elegans Hypothetical pr...    44   1e-04
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    30   1.4  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    30   1.4  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    30   1.4  
U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome reg...    29   4.3  
U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome reg...    29   4.3  
AC006676-4|AAK71380.1|  288|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC024202-10|AAF36032.1|  327|Caenorhabditis elegans Hypothetical...    28   5.6  

>Z73428-5|CAA97808.2|  209|Caenorhabditis elegans Hypothetical
           protein M142.5 protein.
          Length = 209

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
 Frame = +3

Query: 117 IGXIVATRTCYXENIEGEVLAFDPQTKMLILKCQSSSGNPKR----HDVNIVNLSLVSDV 284
           IG  V   T    +  G V++FD   K+L+L  +  + N       +  ++ N+ ++S+ 
Sbjct: 13  IGACVEIETTNGLSARGVVISFDTTRKVLVLDTKEMAINKPMIRIFNSEHLKNIKVLSEA 72

Query: 285 QIKKEVSTVPEPPQSLNLHRLN-TRVRNSIENKR-RLVSAL--SACLDPEGQRLFMAIAR 452
             + E     +  Q    + +N TR    ++     L   L  S  +   GQ+ ++ + R
Sbjct: 73  LEESEKFARAKTEQFAQNNPVNGTRTTERLDKTLGELTPNLMKSPAISIRGQQAYLQLKR 132

Query: 453 VIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYN 581
            I D  W G+ IRV    +  V++  PY+V DV  +  +  ++
Sbjct: 133 TIPDTCWCGEDIRV----LGLVLVHKPYEVSDVTKDAKATGFD 171


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 312 PEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 437
           P+ PQ L+ H  +   +N I     + SA S+C  P+G   F
Sbjct: 85  PQQPQLLHHHNNHLGYQNGIHQITSINSAASSCSSPDGDSAF 126


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 312 PEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 437
           P+ PQ L+ H  +   +N I     + SA S+C  P+G   F
Sbjct: 102 PQQPQLLHHHNNHLGYQNGIHQITSINSAASSCSSPDGDSAF 143


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 312 PEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 437
           P+ PQ L+ H  +   +N I     + SA S+C  P+G   F
Sbjct: 214 PQQPQLLHHHNNHLGYQNGIHQITSINSAASSCSSPDGDSAF 255


>U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform b
           protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +3

Query: 231 NPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSAC 410
           N  RH  N+V      D  IKK+  ++ E    L  ++    +RN IE  R  + +L   
Sbjct: 20  NVIRHLTNLVKSPASGDDDIKKKEDSIMELGNILAQNKQTEELRNMIEQTRPFLVSLGKA 79

Query: 411 LDPEGQRLFMAIARVIDD 464
              +  R  + +   IDD
Sbjct: 80  KAAKLVRDLVDLCLKIDD 97


>U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform a
           protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +3

Query: 231 NPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSAC 410
           N  RH  N+V      D  IKK+  ++ E    L  ++    +RN IE  R  + +L   
Sbjct: 38  NVIRHLTNLVKSPASGDDDIKKKEDSIMELGNILAQNKQTEELRNMIEQTRPFLVSLGKA 97

Query: 411 LDPEGQRLFMAIARVIDD 464
              +  R  + +   IDD
Sbjct: 98  KAAKLVRDLVDLCLKIDD 115


>AC006676-4|AAK71380.1|  288|Caenorhabditis elegans Hypothetical
           protein M04F3.1 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 203 DSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIHGTRAPPIIELAQIEHKS 358
           D +  I + ++E AR   ++ V  + +S       G  APP   ++Q  H+S
Sbjct: 148 DKDFTIFELEAEAARLFFQKNVSEKLKSVDSDGFQGMLAPPKSRMSQTSHQS 199


>Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical
           protein H03G16.5 protein.
          Length = 227

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 294 KEVST--VPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLD 416
           KE+S   V +   ++NL RL TRV   I+NK  L+    A L+
Sbjct: 65  KEISKKKVFKMDDTMNLLRLGTRVHLIIQNKEELIDKYKAMLE 107


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 194 KNVDSEMPIVQRQSETARRQHREPVPRQRRSNQ 292
           +N  S+    Q+Q++ AR+QH + + +Q++SNQ
Sbjct: 21  QNQPSQQNNQQQQNQGARQQHPQQMQQQQQSNQ 53


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 194 KNVDSEMPIVQRQSETARRQHREPVPRQRRSNQ 292
           +N  S+    Q+Q++ AR+QH + + +Q++SNQ
Sbjct: 145 QNQPSQQNNQQQQNQGARQQHPQQMQQQQQSNQ 177


>AC024202-10|AAF36032.1|  327|Caenorhabditis elegans Hypothetical
           protein Y71H2B.3 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 200 VDSEMPIVQRQSETARRQHREPVP 271
           +D E+P+++  +E A   HR P P
Sbjct: 204 IDDELPLLKMMAERASHPHRHPAP 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,090,572
Number of Sequences: 27780
Number of extensions: 337738
Number of successful extensions: 1030
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)