Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13g07
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    26   0.30 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.70 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.92 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.8  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.6  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 593 IRRKTLARSSHACAPTINLTYIETLLYY 676
           +RRKTL  + +   P ++++Y+  L +Y
Sbjct: 231 LRRKTLFYTVNLIVPCVSISYLSVLAFY 258


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 593 IRRKTLARSSHACAPTINLTYIETLLYY 676
           IRRKTL  + +   PT+ ++++  L++Y
Sbjct: 229 IRRKTLFYTVNLILPTVLISFLCVLVFY 256


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 593 IRRKTLARSSHACAPTINLTYIETLLYY 676
           +RRKTL  + +   P + ++++  L++Y
Sbjct: 232 LRRKTLFYTVNLIIPCVGISFLSVLVFY 259


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 237 KRHDVNIVNLSLVSDVQIKKEVSTVPEPP 323
           K  +VN ++  +  +V+IK +V+  P PP
Sbjct: 313 KSLEVNHISARVGDNVEIKCDVTGTPPPP 341


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 288 IKKEVSTVPEPPQSL 332
           ++  +S+VP+PP+SL
Sbjct: 49  VENTISSVPQPPRSL 63


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +3

Query: 255 IVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACL 413
           +  L +VS + ++ +  T+    ++LNL  +++ + +  E   R    + ACL
Sbjct: 8   LFTLCIVSYMMVRCDDITLCLKQENLNLDDIDSLLEDESERMLRKRGCIEACL 60


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +3

Query: 495 YNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHW 611
           Y++K  +    P YK+D  + + +  +Y Y  + +  +W
Sbjct: 206 YSSKYMREYNDPEYKLDYFMEDVELNAYYYYMREMLPYW 244


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 579 NYIKKFVERHWRD 617
           NY+ KFV  +W +
Sbjct: 338 NYLTKFVSEYWME 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,187
Number of Sequences: 438
Number of extensions: 4045
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)