Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13g03
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736...    28   4.9  
10_02_0152 - 5902554-5903058,5904171-5904670                           28   6.5  
05_05_0149 - 22733703-22736216                                         28   6.5  
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    28   6.5  
05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922     27   8.5  

>07_03_0796 +
           21572131-21572204,21573427-21573482,21573580-21573671,
           21574103-21574205,21574297-21574434,21574654-21574907
          Length = 238

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 324 GRNLNIEFRSIVDNFLIRLGIWHILPNSEIKDVADLKTNNTFHELK 461
           G  L+  FR +VDNFL  +G W  +    + +  D++   T H+LK
Sbjct: 198 GLKLSPWFRLVVDNFL--MGWWDHVEKGTLNEAVDME---TIHKLK 238


>10_02_0152 - 5902554-5903058,5904171-5904670
          Length = 334

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 378 LGIWHILPNSEIKDVADLKTNNTFHELKNSRNPVILYCHGYGDSTKVKP 524
           +  WH +   + +DV+      +  E     +P+  +  GY +++KVKP
Sbjct: 174 ISFWHFINRDKSRDVSSSYVWESVRECTYFGSPIWDHILGYWNASKVKP 222


>05_05_0149 - 22733703-22736216
          Length = 837

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 415 LISEFGSICQIPNLMRKLSTIERNSMLRFLPHVTLQLDG 299
           L + F S+C I   + K++T++++  + F P    +L G
Sbjct: 699 LENRFSSLCGIQEEISKIATLDKSDEVHFTPFQAAKLQG 737


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 324 GRNLNIEFRSIVDNFLIRLGIWHILPNSEIKDVADLKT 437
           G  L+  FR +VDNFL+R   W  +    +++  D+KT
Sbjct: 254 GIKLSPWFRLVVDNFLMRW--WDHVEQGTLEEAIDMKT 289


>05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922
          Length = 618

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 243 SGPFYCIGTSGAARQLGIPGRRPSAKRPSLRGAQKPCCAG 124
           +G F+ I     A QLG+ G   SA  PSLR    P C G
Sbjct: 85  AGRFWTIAAGSVAYQLGMVGLTVSALVPSLR---PPPCRG 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,528,824
Number of Sequences: 37544
Number of extensions: 251195
Number of successful extensions: 722
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)