Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13g02
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    29   0.46 
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    26   5.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.5  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    25   9.9  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.9  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
 Frame = -2

Query: 575 LQGHVVWSGILVCTRP-DIVENRVQVKSDHTDENG------KREYVGHII*YLVHNFVSL 417
           L+G V+ S       P  +VE  + +KS+  +E G        E + +I  Y+ HN V L
Sbjct: 10  LKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYI--YIHHNDVYL 67

Query: 416 HGIFGIVSEMVKMN-FVNELLSDDIVFFKASQYQSALDNFI 297
             +  + S+ ++M  F+ ++    I +FK  Q +S  DNF+
Sbjct: 68  LALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFV 108


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 411 SMKTYKVVHKISNNMTYIFSFSIFVCVVTFNL 506
           + K Y+V+  + + +T++F+F +F   ++ NL
Sbjct: 302 TFKKYQVIEALKDPVTWLFTFHVFCNQLSNNL 333


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 179 YIYYSSKIDAKVFSYTKTVSVNSIIAKWYSYFKIIN-IYP 295
           ++ Y+++ D  ++SY  T   ++II  W S   + N IYP
Sbjct: 642 WVLYANRNDTHLWSYDCTDEDSAIIGPWKSGTTLRNLIYP 681


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 375 IHLYHFRNDSEYSMKTYKVVHKISNNMTYIFSFSIFVCV 491
           I++Y +  DS++    Y+   +  +NMT    FS F C+
Sbjct: 224 INIYEWCGDSDFVSSGYQERTEEFSNMTVPMIFSEFGCI 262


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 580 HCCKVTLSGRGFLYAP 533
           +CC +T +G GFL+ P
Sbjct: 12  YCCMLTFAGIGFLWNP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,969
Number of Sequences: 5004
Number of extensions: 55640
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)