Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13g02
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99773-1|CAB16923.2|  406|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z92829-6|CAB07346.1|  214|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF100307-1|ABB88211.1|  317|Caenorhabditis elegans Hypothetical ...    29   2.3  

>Z99773-1|CAB16923.2|  406|Caenorhabditis elegans Hypothetical
           protein F18H3.5b protein.
          Length = 406

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 405 EYSMKTYK-VVHKISNNMTYIFSFSIFVCVVTFNLNPVFNNIGSGAYKN 548
           ++S K  K  + K  NN T    FSIF    T +L  +F  +G GAY N
Sbjct: 67  KFSKKILKSFIIKFGNNGTIAVVFSIFPTGATPSLTFLFQALGKGAYGN 115


>Z92829-6|CAB07346.1|  214|Caenorhabditis elegans Hypothetical
           protein F10A3.7 protein.
          Length = 214

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 333 FKKYDVVGQQFINKIHLYHFRNDSEYSMKTYKVVHKISNNMTYIFSFSIFVC 488
           F+    V  +F+N IHL+     S+     YK +    ++ T ++SF  F C
Sbjct: 13  FETIGFVVSEFLNSIHLFLISKMSKQMFGNYKYLMFSFSSFTIVYSFVNFWC 64


>AF100307-1|ABB88211.1|  317|Caenorhabditis elegans Hypothetical
           protein T12B5.6b protein.
          Length = 317

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 360 QFINKIHLYHFRNDSEYSMKTYKVVHKISNNMTYIFSFSIF 482
           QF   IHL H++N  E+S+ + +V  + +N + + F F  F
Sbjct: 191 QFERIIHLEHWKNAEEFSINSRRV--ECTNAIVHFFHFKCF 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,835,658
Number of Sequences: 27780
Number of extensions: 310732
Number of successful extensions: 786
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)