Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13f24
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 27 2.4
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 3.2
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 26 4.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 4.2
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 5.6
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 26 5.6
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 7.4
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 7.4
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 25 7.4
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 7.4
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 25 7.4
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 9.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 9.8
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 189 GHK*LKFIKSTLRNNRETEMESFQEERSCSNPGVHSLEAF-ERLSVW 326
GH KS+ RN+ E E+ Q+ER + + E+ + L VW
Sbjct: 29 GHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVW 75
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 151 VNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKV 255
VN+ L K + N + N+ Y++T + WKV
Sbjct: 663 VNTSATLSKDLMSLPINEWVKNVMYIVTHETDWKV 697
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +1
Query: 103 DSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKP 243
D G+D+ Y + DF K +D+ + + N+ +V P
Sbjct: 60 DGGADEPYDSSDSCATFEFADFFKDNLDDFALDGPIININHVNQTSP 106
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 383 RRKKRNFPHSAQNLDGTYRGKLKKDHTHQIKGSLPMSK*FDLENSLRGD 529
R K R PHS L G + K+HT+ KG L F ++ + GD
Sbjct: 19 RNKSRKRPHS---LGGPGALQELKEHTNPAKGILKSYSSFSVDPAFTGD 64
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 282 PGVHSLEAFERLSVW*QRSLQTKSHAQRSHNTLSAE 389
P +HS+++FE S + RSL K +R+++ + E
Sbjct: 906 PHMHSVKSFETESSFGNRSLSPKQENRRTYSDSTIE 941
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 3 TSKQSNLYANTENESEKNNQYKMTESLMQETKN*FRER*KLPI 131
++KQ LY+ +NE+ KN Y + ++ K +R KL +
Sbjct: 566 SNKQRKLYSKLKNENSKNENY---NNALRNRKRDIEKRKKLKV 605
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 415 TKSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRKF 516
TKS N+ K +K P + + V+ N+K ++ +KF
Sbjct: 26 TKSSDNVTPK-QKSPNSTEEDVSLNLKTLKAKKF 58
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 7.4
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 329 TAVLANKKSRPKESQYIIRRKKRNFPHSAQNLDGTYRGKLKKDHTHQIKGSLPMSK*FDL 508
+AVLA K R + + + PH A N R K H HQ S+P S+ F
Sbjct: 51 SAVLAEWKRRKRRLKG--SNSDSDSPHHASNPHPNSRQK----HQHQTSKSVPRSQRFSR 104
Query: 509 ENSLRGDSIR-FLITPTEHQS 568
E +++ ++ + F T+ QS
Sbjct: 105 ELNVKKENKKVFSSQTTKRQS 125
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 148 LVNSKDFLKKKVDEATSNS-SLSNLRYVITEKPKWKVFKKREAVAI 282
L NS D + KK+D + ++S +L + Y +T++PK++ + +A+
Sbjct: 251 LNNSTDAVPKKLDASKASSLNLEKVSY-LTDEPKFRFDFNNDEMAV 295
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 244 KWKVFKKREAVAIPAYTALKPLKGCPCGNSGPCKQKVTPKGVTIHYPQKKKKFS 405
K K + V++P ++ ++ +G SGP T G I++P+KK + S
Sbjct: 229 KLSASKNSQRVSLPFFSKIELDEGSSF--SGPKISARTSSGKIIYFPKKKNRHS 280
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 301 KPLKGCPCGNS-GPCKQKVTPKGVTIHYPQKKKK 399
K L C S GPC V+PKGV P K +
Sbjct: 24 KILAACSYSLSVGPCSLAVSPKGVNSKSPSLKNE 57
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 139 KMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKVFKKREAVAIPAYTALK 303
K+GL + +K V + T +L YV+ + P+W + KK V+ +A+K
Sbjct: 787 KLGLNIPLNEVKNSVTKVTCACFEPSLDYVVVKIPRWDL-KKFTRVSTQLSSAMK 840
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 9.8
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Frame = +3
Query: 231 NRETEMESFQEERSCSNPGVHSLEAFERLSVW*QR-SLQTKSHAQRS--HNTLSAEKKEI 401
N ++ E F E PG+ L + L W Q SLQ + R+ H+ S E +
Sbjct: 84 NEDSISEHFDEYLGADKPGISFLTRLKTLESWFQSLSLQDRLTTLRTLLHHLPSQEISTL 143
Query: 402 FRIRHKI*TEHTGEN*KRTIRTKSKGHSQCQSDS 503
++G + +++ + KG S S S
Sbjct: 144 LSSSLTSSPSNSGLSLDKSLPSSPKGDSPSLSSS 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,509
Number of Sequences: 5004
Number of extensions: 61394
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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