Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte13f20
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 280 4e-76
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 280 4e-76
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 280 4e-76
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 278 2e-75
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 252 1e-67
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 252 1e-67
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 252 1e-67
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 252 2e-67
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 250 4e-67
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 250 4e-67
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 247 4e-66
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 247 4e-66
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 231 2e-61
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 231 3e-61
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 214 4e-56
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 188 3e-48
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 140 5e-34
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 140 8e-34
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 139 1e-33
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 137 4e-33
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 137 4e-33
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 135 2e-32
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 119 2e-27
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 119 2e-27
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 75 5e-14
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 75 5e-14
Z81523-11|CAB04247.2| 403|Caenorhabditis elegans Hypothetical p... 31 0.73
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 30 0.96
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 30 0.96
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 30 0.96
Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 28 3.9
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 28 3.9
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 28 3.9
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 28 3.9
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 28 3.9
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 28 3.9
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 28 3.9
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 28 3.9
Z49913-1|CAA90142.1| 340|Caenorhabditis elegans Hypothetical pr... 28 5.1
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 28 5.1
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 28 5.1
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 28 5.1
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 27 6.8
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 27 9.0
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 27 9.0
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 27 9.0
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 280 bits (687), Expect = 4e-76
Identities = 123/139 (88%), Positives = 133/139 (95%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMPSDK+LGG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+D+ LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 458 RIRKLADQCTGLQGFLVFH 514
RIR+LAD CTGLQGFLVFH
Sbjct: 121 RIRRLADNCTGLQGFLVFH 139
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 280 bits (687), Expect = 4e-76
Identities = 123/139 (88%), Positives = 133/139 (95%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMPSDK+LGG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+D+ LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 458 RIRKLADQCTGLQGFLVFH 514
RIR+LAD CTGLQGFLVFH
Sbjct: 121 RIRRLADNCTGLQGFLVFH 139
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 280 bits (687), Expect = 4e-76
Identities = 123/139 (88%), Positives = 133/139 (95%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMPSDK+LGG DDSF+TFFSETG+G+
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
HVPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+D+ LD
Sbjct: 61 HVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLD 120
Query: 458 RIRKLADQCTGLQGFLVFH 514
RIR+LAD CTGLQGFLVFH
Sbjct: 121 RIRRLADNCTGLQGFLVFH 139
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 278 bits (682), Expect = 2e-75
Identities = 122/138 (88%), Positives = 132/138 (95%)
Frame = +2
Query: 101 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKH 280
RE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMPSDK+LGG DDSF+TFFSETG+G+H
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 281 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 460
VPRAV VDLEPTV+DE+RTGTYR LFHPEQLITGKEDAANNYARGHYTIGKEI+D+ LDR
Sbjct: 61 VPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDR 120
Query: 461 IRKLADQCTGLQGFLVFH 514
IR+LAD CTGLQGFLVFH
Sbjct: 121 IRRLADNCTGLQGFLVFH 138
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 252 bits (617), Expect = 1e-67
Identities = 109/139 (78%), Positives = 127/139 (91%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MPSD+ G +SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D VLD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
RIR+LAD C+GLQGF VFH
Sbjct: 119 RIRRLADNCSGLQGFFVFH 137
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 252 bits (617), Expect = 1e-67
Identities = 108/139 (77%), Positives = 125/139 (89%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE +S+HIGQAGVQIGNACWELYCLEHGI PDG MP D + G D S+NTFFSET +GK
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
HVPRA+FVDLEPTV+DEVRTGTY +LFHPEQLI+GKEDAANNYARGHYTIGKE++DVV+D
Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYARGHYTIGKELIDVVMD 120
Query: 458 RIRKLADQCTGLQGFLVFH 514
R+R+L ++C LQGFL+FH
Sbjct: 121 RVRRLTERCQSLQGFLIFH 139
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 252 bits (617), Expect = 1e-67
Identities = 109/139 (78%), Positives = 127/139 (91%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MPSD+ G +SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNGR 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D VLD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
RIR+LAD C+GLQGF VFH
Sbjct: 119 RIRRLADNCSGLQGFFVFH 137
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 252 bits (616), Expect = 2e-67
Identities = 108/140 (77%), Positives = 125/140 (89%)
Frame = +2
Query: 95 KMRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAG 274
+ RE IS+H+GQAGVQ+GNACWELYCLEHGIQPDG + + +LG DDSFNTFFSET AG
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
Query: 275 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVL 454
KHVPRA+ VDLEPT +DE+RTGTY+ LFHPEQL+TGKEDAANNYARGHYTIGKEI+DVV+
Sbjct: 65 KHVPRAIMVDLEPTPIDEIRTGTYKTLFHPEQLLTGKEDAANNYARGHYTIGKEIIDVVM 124
Query: 455 DRIRKLADQCTGLQGFLVFH 514
DR+R+L + C GLQGFLVFH
Sbjct: 125 DRVRRLVENCRGLQGFLVFH 144
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 250 bits (613), Expect = 4e-67
Identities = 108/139 (77%), Positives = 127/139 (91%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MP+ T G +SF TFFS+TG+G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D VLD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
RIR+LAD C+GLQGF VFH
Sbjct: 119 RIRRLADNCSGLQGFFVFH 137
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 250 bits (613), Expect = 4e-67
Identities = 108/139 (77%), Positives = 127/139 (91%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MP+ T G +SF TFFS+TG+G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGR 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPR++FVDLEPTVVDE+RTGTY++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D VLD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
RIR+LAD C+GLQGF VFH
Sbjct: 119 RIRRLADNCSGLQGFFVFH 137
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 247 bits (605), Expect = 4e-66
Identities = 107/139 (76%), Positives = 125/139 (89%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MPS++ GG SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPR++FVDLEPTVVDE+RTG Y++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D LD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
RIR+LAD C+GLQGF VFH
Sbjct: 119 RIRRLADNCSGLQGFFVFH 137
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 247 bits (605), Expect = 4e-66
Identities = 107/139 (76%), Positives = 125/139 (89%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MPS++ GG SF TFFS+TG G+
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNGR 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPR++FVDLEPTVVDE+RTG Y++LFHPEQ+ITGKEDAANNYARGHYT+GKE++D LD
Sbjct: 59 YVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTTLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
RIR+LAD C+GLQGF VFH
Sbjct: 119 RIRRLADNCSGLQGFFVFH 137
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 231 bits (566), Expect = 2e-61
Identities = 103/140 (73%), Positives = 118/140 (84%), Gaps = 1/140 (0%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDG-QMPSDKTLGGGDDSFNTFFSETGAG 274
MRE IS+H+GQAGVQIGNACWELYCLEHGI PDG M D G S TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDGTSMEPD----GNSGSLGTFFSDTGYG 56
Query: 275 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVL 454
+HVPR++FVDLEPTVVDE+RTG Y++LFHPEQ++TGKEDAANNYARGHYT+GKEI+D L
Sbjct: 57 RHVPRSIFVDLEPTVVDEIRTGAYKKLFHPEQMLTGKEDAANNYARGHYTVGKEIIDTTL 116
Query: 455 DRIRKLADQCTGLQGFLVFH 514
DRIR+LA+ C GLQGF VFH
Sbjct: 117 DRIRRLANNCEGLQGFFVFH 136
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 231 bits (565), Expect = 3e-61
Identities = 99/138 (71%), Positives = 118/138 (85%)
Frame = +2
Query: 101 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKH 280
RE IS+H+GQAGVQIGNACWEL+CLEHGIQPDG D T ++ NTFF+ET GKH
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKH 67
Query: 281 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 460
VPR +FVDLEPTVVDEVRTGTYR LFHPEQL++GKEDAAN YARG YTIG+E++DVV+DR
Sbjct: 68 VPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVVMDR 127
Query: 461 IRKLADQCTGLQGFLVFH 514
+++LA+ C GLQGF++FH
Sbjct: 128 VKRLAENCNGLQGFVIFH 145
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 214 bits (522), Expect = 4e-56
Identities = 93/138 (67%), Positives = 110/138 (79%)
Frame = +2
Query: 101 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKH 280
REC+S+HIGQAG QIGNACWELYC+EHG+ G + ++ S FFSE+ GKH
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEK-NKKQQSLQAFFSESMNGKH 64
Query: 281 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 460
VPRA++VDLEPTV+DE+R G Y LFHP+Q+I GKEDAANNYARGHYTIGKE++DVVLDR
Sbjct: 65 VPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVVLDR 124
Query: 461 IRKLADQCTGLQGFLVFH 514
IRK + C GLQGFLVFH
Sbjct: 125 IRKQTENCEGLQGFLVFH 142
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 188 bits (457), Expect = 3e-48
Identities = 80/117 (68%), Positives = 98/117 (83%)
Frame = +2
Query: 164 LYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGT 343
++CLEHGIQPDG D T ++ NTFF+ET GKHVPR +FVDLEPTVVDEVRTGT
Sbjct: 1 MFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTVVDEVRTGT 60
Query: 344 YRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFH 514
YR LFHPEQL++GKEDAAN YARG YTIG+E++DVV+DR+++LA+ C GLQGF++FH
Sbjct: 61 YRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVVMDRVKRLAENCNGLQGFVIFH 117
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 140 bits (340), Expect = 5e-34
Identities = 68/139 (48%), Positives = 88/139 (63%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE + V GQ G QIG WE+ EHGIQPDG + L + N +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQL--ERINVYYNEANGGK 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
+RK A+ C LQGF + H
Sbjct: 119 VVRKEAEGCDCLQGFQLTH 137
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 140 bits (338), Expect = 8e-34
Identities = 68/139 (48%), Positives = 89/139 (64%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE + V GQ G QIG+ WE+ EHGIQPDG + L + + +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQL--ERIDVYYNEANNGK 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
IRK A+ C LQGF + H
Sbjct: 119 VIRKEAEGCDCLQGFQLTH 137
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 139 bits (337), Expect = 1e-33
Identities = 68/139 (48%), Positives = 89/139 (64%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE + V GQ G QIG+ WE+ EHGIQPDG + L + + +++E GK
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQL--ERIDVYYNEANNGK 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
IRK A+ C LQGF + H
Sbjct: 119 VIRKEAEGCDCLQGFQLTH 137
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 137 bits (332), Expect = 4e-33
Identities = 66/139 (47%), Positives = 88/139 (63%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE + + GQ G QIG+ WE+ EHGI P GQ D L + N +++E G+ K
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQL--ERINVYYNEAGSNK 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
+RK A+ LQGF + H
Sbjct: 119 VVRKEAESTDCLQGFQLTH 137
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 137 bits (332), Expect = 4e-33
Identities = 66/139 (47%), Positives = 88/139 (63%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE + + GQ G QIG+ WE+ EHGI P GQ D L + N +++E G+ K
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQL--ERINVYYNEAGSNK 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 59 YVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
+RK A+ LQGF + H
Sbjct: 119 VVRKEAESTDCLQGFQLTH 137
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 135 bits (326), Expect = 2e-32
Identities = 65/139 (46%), Positives = 84/139 (60%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
MRE + + GQ G QIG WE+ EHGI P G D L + N +++E GK
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQL--ERINVYYNEASGGK 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPRA VDLEP +D VR G + QLF P+ + G+ A NN+A+GHYT G E+VD VLD
Sbjct: 59 YVPRACLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLD 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
+RK A+ C LQGF + H
Sbjct: 119 VVRKEAESCDCLQGFQMTH 137
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 119 bits (286), Expect = 2e-27
Identities = 58/139 (41%), Positives = 83/139 (59%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
M+E I+V +GQ G QIG WE EHG+Q DG D G + +++ E K
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDN--GSQLERITSYYKEMEGRK 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPRA+ VDL+P ++ VR+ Y +LF PE ++G+ A NN++RG+Y G EIVD VL
Sbjct: 59 YVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVLS 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
IR+ A+ L+GF + H
Sbjct: 119 VIRREAEAADSLEGFQLIH 137
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 119 bits (286), Expect = 2e-27
Identities = 58/139 (41%), Positives = 83/139 (59%)
Frame = +2
Query: 98 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGK 277
M+E I+V +GQ G QIG WE EHG+Q DG D G + +++ E K
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDN--GSQLERITSYYKEMEGRK 58
Query: 278 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLD 457
+VPRA+ VDL+P ++ VR+ Y +LF PE ++G+ A NN++RG+Y G EIVD VL
Sbjct: 59 YVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVDKVLS 118
Query: 458 RIRKLADQCTGLQGFLVFH 514
IR+ A+ L+GF + H
Sbjct: 119 VIRREAEAADSLEGFQLIH 137
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 74.5 bits (175), Expect = 5e-14
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Frame = +2
Query: 110 ISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKHVPR 289
++VH+GQ G Q+ A W+ EHGI GQ + + +D + F + +VPR
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPR 64
Query: 290 AVFVDLEPTVVD-EVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDVVLDR 460
AV VDLEP V++ +++ + LF+ + + A NN+A G Y G+E+ + ++D
Sbjct: 65 AVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDI 123
Query: 461 IRKLADQCTGLQGFLVFH 514
I + A+ L G L H
Sbjct: 124 IIREAENTNNLDGILFTH 141
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 74.5 bits (175), Expect = 5e-14
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Frame = +2
Query: 110 ISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGAGKHVPR 289
++VH+GQ G Q+ A W+ EHGI GQ + + +D + F + +VPR
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPR 64
Query: 290 AVFVDLEPTVVD-EVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDVVLDR 460
AV VDLEP V++ +++ + LF+ + + A NN+A G Y G+E+ + ++D
Sbjct: 65 AVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDI 123
Query: 461 IRKLADQCTGLQGFLVFH 514
I + A+ L G L H
Sbjct: 124 IIREAENTNNLDGILFTH 141
>Z81523-11|CAB04247.2| 403|Caenorhabditis elegans Hypothetical
protein F32H2.7 protein.
Length = 403
Score = 30.7 bits (66), Expect = 0.73
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +3
Query: 111 SPFTSVKPAYRLATPAGSC----TASSMESSLMVRCRQIRPSAVE-TTPLTRSS 257
SP T V A +ATP+GSC TA +ES +R Q +AVE T ++RSS
Sbjct: 334 SPTTGVLTAQSIATPSGSCQSVFTAKEIES---IRSSQDVLTAVEILTDMSRSS 384
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 30.3 bits (65), Expect = 0.96
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +2
Query: 53 AFFF*VVFLRKSSYKM--RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLG 226
AFF V L KS + R+ +VH QI +C CL +G++P G P +
Sbjct: 34 AFFRRTVALTKSFKCITGRDDCNVHYSMH--QICRSCRHKKCLSNGMKPGGVQPKKPNIE 91
Query: 227 GGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDE 328
G FF+++G ++ F ++ P DE
Sbjct: 92 TG----RAFFTKSGLKRN---KKFANVSPQTADE 118
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 30.3 bits (65), Expect = 0.96
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +2
Query: 53 AFFF*VVFLRKSSYKM--RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLG 226
AFF V L KS + R+ +VH QI +C CL +G++P G P +
Sbjct: 52 AFFRRTVALTKSFKCITGRDDCNVHYSMH--QICRSCRHKKCLSNGMKPGGVQPKKPNIE 109
Query: 227 GGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDE 328
G FF+++G ++ F ++ P DE
Sbjct: 110 TG----RAFFTKSGLKRN---KKFANVSPQTADE 136
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 30.3 bits (65), Expect = 0.96
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +2
Query: 53 AFFF*VVFLRKSSYKM--RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLG 226
AFF V L KS + R+ +VH QI +C CL +G++P G P +
Sbjct: 34 AFFRRTVALTKSFKCITGRDDCNVHYSMH--QICRSCRHKKCLSNGMKPGGVQPKKPNIE 91
Query: 227 GGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDE 328
G FF+++G ++ F ++ P DE
Sbjct: 92 TG----RAFFTKSGLKRN---KKFANVSPQTADE 118
>Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +3
Query: 213 IRPSAVETTPLTRSSARPARESTCHELSLLIWNQL*STRFVPALTVNCSTPS----SSSL 380
I P T ++ + H ++L+ L ST PALT + + P+ +S
Sbjct: 221 ITPKHTNLTTTATTTKKVTTTERAHLENILLTIPLKSTTQSPALTSSSAKPTKPPTTSET 280
Query: 381 AKRMLPITMPEDIIPLARRS 440
+K P T+P ++P+ S
Sbjct: 281 SKPTFPSTLPAYVLPMTTTS 300
>Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +3
Query: 213 IRPSAVETTPLTRSSARPARESTCHELSLLIWNQL*STRFVPALTVNCSTPS----SSSL 380
I P T ++ + H ++L+ L ST PALT + + P+ +S
Sbjct: 221 ITPKHTNLTTTATTTKKVTTTERAHLENILLTIPLKSTTQSPALTSSSAKPTKPPTTSET 280
Query: 381 AKRMLPITMPEDIIPLARRS 440
+K P T+P ++P+ S
Sbjct: 281 SKPTFPSTLPAYVLPMTTTS 300
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 317 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 460
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 625 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 670
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 317 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 460
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 839 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 884
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 317 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 460
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 975 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1020
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 317 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 460
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 1024 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1069
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 317 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 460
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 1024 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1069
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 317 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 460
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 1016 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1061
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 317 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 460
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 1027 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1072
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 317 VVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDVVLDR 460
VV +++TG + PE+ + E A+N+Y + Y + K V ++D+
Sbjct: 1028 VVHDMKTGEHPGYTKPEEFVRRIESASNDYIK--YDLQKPDVVTIIDK 1073
>Z49913-1|CAA90142.1| 340|Caenorhabditis elegans Hypothetical
protein ZK938.2 protein.
Length = 340
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 246 TRSSARPARESTCHELSLLIWNQL*STRFV---PALTVNCSTPSSSSLAKRMLPITMPED 416
+R+ P R+ H L +++Q S+ + AL VN + S+ S+ +LP T+PE+
Sbjct: 213 SRNQLTPCRKFDSHSCPLSVYHQTNSSNCIGEATALKVNVAPYSTKSI---ILPFTIPEE 269
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 89 SYKMRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPS-DKT 220
+Y R I +AG + +C CLE G++PD P DKT
Sbjct: 86 NYVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 89 SYKMRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPS-DKT 220
+Y R I +AG + +C CLE G++PD P DKT
Sbjct: 86 NYVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 89 SYKMRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPS-DKT 220
+Y R I +AG + +C CLE G++PD P DKT
Sbjct: 86 NYVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -1
Query: 319 YSWFQI--NKDSSWHVLSRAGLAE--ERVKGVVSTAEGLI*RHLTIRLDSMLEAVQLPAG 152
++W I +++ +L+ G+AE + VK +T LI HL L L +QLP
Sbjct: 2134 FAWLDIVGHRNVIGRLLANTGIAETVDAVK-TAATYTQLIISHLKF-LAPFLRNIQLPKS 2191
Query: 151 VANLYAG 131
+A LY G
Sbjct: 2192 IAILYKG 2198
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 248 TFFSETGAGKHVPRAVFVDLEPTVVD 325
T ++ TG+GK++ F DL P + D
Sbjct: 136 TTYTSTGSGKNIEYITFFDLTPIIKD 161
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 248 TFFSETGAGKHVPRAVFVDLEPTVVD 325
T ++ TG+GK++ F DL P + D
Sbjct: 136 TTYTSTGSGKNIEYITFFDLTPIIKD 161
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 248 TFFSETGAGKHVPRAVFVDLEPTVVD 325
T ++ TG+GK++ F DL P + D
Sbjct: 131 TTYTSTGSGKNIEYITFFDLTPIIKD 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,808
Number of Sequences: 27780
Number of extensions: 276079
Number of successful extensions: 787
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -