Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f17
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    29   0.64 
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          28   1.5  
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    27   3.4  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   6.0  
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    25   7.9  
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    25   7.9  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   7.9  

>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRN 331
           GVGK+ L    A +    S   T+G   +++  +  EG     T  +++WD  G    R 
Sbjct: 18  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTFEL-EG----KTVKLQIWDTAGQERFRT 72

Query: 332 TRDVFYQPTHGLL 370
               +Y+  HG++
Sbjct: 73  ITSSYYRGAHGII 85


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 255 YLCNLTSTEQPTVHPGDKMGLLCAIKCVKDVLP 157
           YLC   + E P +H GD   +L  +K V ++ P
Sbjct: 118 YLCCFDTLEVPIIHNGDSKTILDELKKVIELYP 150


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +2

Query: 158 GKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRNTR 337
           GKT++ + +  N+ +++   TVG +VE   +K        N  F  +WDVGG +  R   
Sbjct: 33  GKTTILYKLKLNQSVVTIP-TVGFNVETVTYK--------NIKF-NVWDVGGQDKIRPLW 82

Query: 338 DVFYQPTHGLLY 373
             ++  T GL++
Sbjct: 83  RHYFTGTKGLIF 94


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYK-EGTQAQNTFFVELWDVGGSNGHR 328
           GVGK+ L  L+  ++   +P +     ++ K+   + +G + +    +++WD  G    R
Sbjct: 19  GVGKSCL--LLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIK----LQIWDTAGQERFR 72

Query: 329 NTRDVFYQPTHGLL 370
                +Y+   G+L
Sbjct: 73  TITTAYYRGAMGIL 86


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 146 IVGVGKTSLTHLIAH 190
           + G GKT+L H+IAH
Sbjct: 424 LAGAGKTTLAHVIAH 438


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 260 EGTQAQNTFFVELWDVGGSNGHRNTRDVFYQPTHGLLY 373
           E  + +N  F  +WDVGG +  R     ++Q T G+++
Sbjct: 54  ETVEYRNISFT-VWDVGGQDKIRPLWRHYFQNTQGIIF 90


>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 278 NTFFVELWDVGGSNGHRNTRDVFYQPTHGLL 370
           N+  + LWD  G   +   R + Y  TH ++
Sbjct: 59  NSIELSLWDTAGQEEYDQLRSLSYSDTHVIM 89


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 198 PFYRRDGRSVALWKLNYTNTKKEHK 272
           P Y+R G    L + +Y  TK+EHK
Sbjct: 326 PQYQRHGYGKLLIQFSYELTKREHK 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,872
Number of Sequences: 5004
Number of extensions: 74816
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)