Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f17
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-37|CAB55148.2|  248|Caenorhabditis elegans Hypothetical...    56   2e-08
Z48621-11|CAE17932.2|  212|Caenorhabditis elegans Hypothetical p...    35   0.049
DQ016970-1|AAY42967.1|  212|Caenorhabditis elegans Rab GTPase GL...    35   0.049
AC087079-5|ABC48240.1|  367|Caenorhabditis elegans Hypothetical ...    32   0.34 
AC087079-4|ABC48239.1|  370|Caenorhabditis elegans Hypothetical ...    32   0.34 
AL117202-19|CAB57899.1|  209|Caenorhabditis elegans Hypothetical...    32   0.45 
AL132865-6|CAB60605.1|  210|Caenorhabditis elegans Hypothetical ...    30   1.4  
U40942-7|AAC47067.2|  218|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF101310-3|AAC69218.1|  205|Caenorhabditis elegans Rab family pr...    27   9.8  

>AL117204-37|CAB55148.2|  248|Caenorhabditis elegans Hypothetical
           protein Y116A8C.10b protein.
          Length = 248

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = +2

Query: 155 VGKTSLTHLIAHNKPILSPGW----TVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNG 322
           VGKTSL H IA        G     T+G +V +  H+Y+ GT  Q T  +ELWD+GG   
Sbjct: 19  VGKTSLCHCIAGGGEPPGGGRSFDSTIGATVVMAWHEYRAGTPEQRTELLELWDIGGMVA 78

Query: 323 HRNTRDVFYQPTHGLL 370
           HR    VF++   G +
Sbjct: 79  HRQAAQVFFEGAVGAI 94


>Z48621-11|CAE17932.2|  212|Caenorhabditis elegans Hypothetical
           protein R07B1.12 protein.
          Length = 212

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRN 331
           GVGKTS+     HN    +   T+G    +K+    E T       +++WD+ G + +  
Sbjct: 21  GVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDENTVVH----LQIWDISGQDRYGV 76

Query: 332 TRDVFYQPTHGLL 370
              V+Y+  H  +
Sbjct: 77  MTRVYYKDAHAAI 89


>DQ016970-1|AAY42967.1|  212|Caenorhabditis elegans Rab GTPase GLO-1
           protein.
          Length = 212

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRN 331
           GVGKTS+     HN    +   T+G    +K+    E T       +++WD+ G + +  
Sbjct: 21  GVGKTSIIRRFVHNVFSSNYKTTIGVDFALKILPVDENTVVH----LQIWDISGQDRYGV 76

Query: 332 TRDVFYQPTHGLL 370
              V+Y+  H  +
Sbjct: 77  MTRVYYKDAHAAI 89


>AC087079-5|ABC48240.1|  367|Caenorhabditis elegans Hypothetical
           protein Y37E3.5b protein.
          Length = 367

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 281 TFFVELWDVGGSNGHRNTRDVFYQPTHGLLY 373
           TF + ++DVGG  G R     +Y   HG++Y
Sbjct: 68  TFHLTIYDVGGDKGIRGIWSNYYAEVHGIIY 98


>AC087079-4|ABC48239.1|  370|Caenorhabditis elegans Hypothetical
           protein Y37E3.5a protein.
          Length = 370

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 281 TFFVELWDVGGSNGHRNTRDVFYQPTHGLLY 373
           TF + ++DVGG  G R     +Y   HG++Y
Sbjct: 68  TFHLTIYDVGGDKGIRGIWSNYYAEVHGIIY 98


>AL117202-19|CAB57899.1|  209|Caenorhabditis elegans Hypothetical
           protein Y47D3A.25 protein.
          Length = 209

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +2

Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRN 331
           GVGK+SL    A N    S  +     V+ K+       Q      +++WD  G    R 
Sbjct: 20  GVGKSSLLLRFADNT--FSENYITTIGVDFKIRTMDINGQRVK---LQIWDTAGQERFRT 74

Query: 332 TRDVFYQPTHGLL 370
               +Y+ THG++
Sbjct: 75  ITSTYYRGTHGVV 87


>AL132865-6|CAB60605.1|  210|Caenorhabditis elegans Hypothetical
           protein Y62E10A.9 protein.
          Length = 210

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/74 (22%), Positives = 34/74 (45%)
 Frame = +2

Query: 149 VGVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHR 328
           +GVGKT +     +   +   G T+G    +K     +G + +    +++WD GG    R
Sbjct: 19  MGVGKTCVVQRFRNGTFVDRQGTTIGVDFTMKT-LVVDGKRVK----LQIWDTGGQERFR 73

Query: 329 NTRDVFYQPTHGLL 370
                +Y+  +G++
Sbjct: 74  TITQSYYRSANGIV 87


>U40942-7|AAC47067.2|  218|Caenorhabditis elegans Hypothetical
           protein K02E10.1 protein.
          Length = 218

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +2

Query: 158 GKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRNTR 337
           GK+ +    A N   +    T+G  V+ KL   K G   ++   +ELWD  G   +R   
Sbjct: 18  GKSCILLRFAENSFRMDHISTLG--VDFKLKTIKLG---RDKIRLELWDTAGMERYRTIY 72

Query: 338 DVFYQPTHGLL 370
           + +Y   HG++
Sbjct: 73  NSYYHSAHGVM 83


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 321 PFEPPTSQSSTKNVFWACVPSLYLCNLTSTEQPTVHP 211
           PF+ PT+++ T + FW   PS     + ST  PT+ P
Sbjct: 728 PFDLPTAETFTLSNFWLTTPSSAPSIVPST--PTISP 762


>AF101310-3|AAC69218.1|  205|Caenorhabditis elegans Rab family
           protein 1 protein.
          Length = 205

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +2

Query: 152 GVGKTSLTHLIAHNKPILSPGWTVGCSVEVKLHKYKEGTQAQNTFFVELWDVGGSNGHRN 331
           GVGK+ L    A +    S   T+G   +++  +  +G     T  +++WD  G    R 
Sbjct: 21  GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG----KTIKLQIWDTAGQERFRT 75

Query: 332 TRDVFYQPTHGLL 370
               +Y+  HG++
Sbjct: 76  ITSSYYRGAHGII 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,203,731
Number of Sequences: 27780
Number of extensions: 422340
Number of successful extensions: 835
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)