Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f17
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.4  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 129 NNKAFKL*VWAKHL*H 176
           N + F+L  WAKH+ H
Sbjct: 239 NKQLFQLVAWAKHIPH 254


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 129 NNKAFKL*VWAKHL*H 176
           N + F+L  WAKH+ H
Sbjct: 239 NKQLFQLVAWAKHIPH 254


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 431 VPPITTTNHVDIYLVVC 481
           +P I+    +DIYLV+C
Sbjct: 295 LPRISYVKAIDIYLVMC 311


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 431 VPPITTTNHVDIYLVVC 481
           +PP++ T  +DI+  VC
Sbjct: 295 LPPVSYTKAIDIWTGVC 311


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 431 VPPITTTNHVDIYLVVC 481
           +PP++ T  +DI+  VC
Sbjct: 295 LPPVSYTKAIDIWTGVC 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,797
Number of Sequences: 438
Number of extensions: 5516
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)