Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte13f15
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    30   0.37 
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   2.6  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   2.6  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   3.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   4.6  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   4.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   6.0  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   8.0  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 429 LYKTNKPNTAKTVWMHVFIEKDKEIDFDE 515
           LYKT +    KT W  V I KD EID  +
Sbjct: 111 LYKTKECTFCKTEWDTVLITKDHEIDIHD 139


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 225 NRIKVNLKGAAAIIKHWP 278
           +R+KVN KG   ++K WP
Sbjct: 69  HRLKVNDKGGMTVVKSWP 86


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 459 KTVWMHVFIEKDKEIDFDEYIPYIRLLSEKHPSYIYRLIVVLND 590
           K ++  V +  D  +D     PY+RL  EKH    +R + V  D
Sbjct: 716 KVIFSVVPLPFDVPVDNSVDFPYLRLFLEKHADDFFRCLEVAFD 759


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 552 PSYIYRLIVVLNDTKLSNYHIIGEENNEIAMSTLWTEKVYSNEKNYGNVK 701
           P Y + L +VL D +  ++  I  +   IA+S++   K+Y  + +  NVK
Sbjct: 368 PGYRFLLKIVLADEENISHAAISPDGELIAISSVLRTKLYQLQYSDENVK 417


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 165 LSEEDQSIPRHYRRRSFSNRNRIKVNLK 248
           LSEED+   +  RRR F N +R + N K
Sbjct: 92  LSEEDEVDKKEKRRRRFENGSRSQNNAK 119


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 188  STSLPTPFLFEQKSYQSKSERSRCYY*TLARSLDQICSVL 307
            S+S+P P L      QSK E S   Y T   S D   +VL
Sbjct: 954  SSSIPGPVLLASLKSQSKDEYSVLLYGTEVSSSDTYLNVL 993


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 228 DFCSKRNGVGNDVESTDLPQRVRHA 154
           DFCS   G  N    T  P + RHA
Sbjct: 352 DFCSNFKGKNNSSSITSSPSKSRHA 376


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 690 HNFFHWNKLFPSTV 649
           H FFHWN  +P TV
Sbjct: 298 HPFFHWNVDYPVTV 311


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +3

Query: 273 WPDHWTRFVAY----WWIGLGMITITTFIIYNSFFILTLMPEAQLKPVTNQIFDTDLYKT 440
           W D    FV Y    W I   +  +T FI+    F   L P A++     ++F +   KT
Sbjct: 254 WHDSDAGFVFYMLHHWAIFTFLGFLTFFIVVYFIFGYALKPAARVSRTGRRVFSSPFSKT 313

Query: 441 NKPNTAKTVWMHVFIEKDKEID 506
           + P+  K    H F   +++ D
Sbjct: 314 S-PSRWKI--FHRFTSSNEKYD 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,612
Number of Sequences: 5004
Number of extensions: 65363
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)